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List of results

• Control Over a Packet Dropping Network with Norm Bounded Uncertainties  + (2008a)
• Design of insulating devices for in vitro synthetic circuits  + (2008b)
• A Framework for Low--Observable Tra jectory Generation in the Presence of Multiple Radars  + (2008b)
• Situational Reasoning for Road Driving in an Urban Environment  + (2008c)
• Distributed Mission and Contingency Management for the DARPA Urban Challenge  + (2008d)
• Model reduction of interconnected linear systems  + (2008e)
• Failure Probability of Verifiable Goal-based Control Programs due to State Estimation Uncertainty  + (2008f)
• Analysis of Dynamics in Escaping Flight Initiation in Drosophila  + (2008g)
• Formal Verification of an Autonomous Vehicle System  + (2008h)
• Probabilistic Performance of State Estimation Across a Lossy Network  + (2008i)
• Design and performance of in vitro transcription rate regulatory circuit  + (2008j)
• Kalman Filtering Over A Packet Dropping Network: A Probabilistic Perspective  + (2008k)
• Kalman Filtering Over A Packet-delaying Network: A Probabilistic Approach  + (2008l)
• Optimal Sensor Hop Selection: Sensor Energy Minimization and Network Lifetime Maximization with Guaranteed System Performance  + (2008m)
• Control Program Verification for a Sample Titan Aerobot Mission  + (2008n)
• Real-valued average consensus over noisy quantized channels  + (2008p)
• On Quantized Consensus by Means of Gossip Algorithm -- Part II: Convergence Time  + (2008q)
• On Quantized Consensus by Means of Gossip Algorithm -- Part I: Convergence Proof  + (2008q)
• Probabilistic Safety Analysis of Sensor-Driven Hybrid Automata  + (2008s)
• Automatic Conversion Software for the Safety Verification of Goal-Based Control Programs  + (2008t)
• Regulatory activity revealed by dynamic correlations in gene expression noise  + (2008v)
• Communication and sensing trade-offs in cooperative mobile networks  + (2008w)
• Compositional stability analysis based on dual decomposition  + (2009a)
• Geometric Control of Particle Manipulation in a Two-Dimensional Fluid  + (2009c)
• Receding Horizon Temporal Logic Planning for Dynamical Systems  + (2009d)
• A bio-plausible design for visual attitude stabilization  + (2009e)
• Quantized Consensus via Adaptive Stochastic Gossip Algorithm  + (2009f)
• Flight dynamics and control of evasive maneuvers: the fruit fly's takeoff  + (2009g)
• To Drop or Not to Drop: Design Principles for Kalman Filtering Over Wireless Fading Channels  + (2009i)
• Dynamics and stability of a class of low Reynolds number swimmers near a wall  + (2009j)
• A bootstrappable bio-plausible design for visual pose stabilization  + (2009k)
• Controlling biological networks by time-delayed signals  + (2009l)
• Simple Delay-Based Implementation of Continuous-Time Controllers  + (2009m)
• Limits on the network sensitivity function for multi-agent systems on a graph  + (2009n)
• Experimental Demonstration of the Dynamics and Stability of a Low Reynolds Number Swimmer Near a Plane Wall  + (2009o)
• Receding Horizon Control for Temporal Logic Specifications  + (2009p)
• Autonomous Driving in Urban Environments: Approaches, Lessons and Challenges  + (2009q)
• Limits on the Network Sensitivity Function for Multi-Agent Systems on a Graph  + (2009r)
• Cone invariance and rendezvous of multiple agents  + (2009s)
• Automatic Synthesis of Robust Embedded Control Software  + (2009t)
• A bio-plausible design for visual pose stabilization  + (2010a)
• Synthesis of Embedded Control Systems with High Sampling Frequencies  + (2010b)
• Tuning a synthetic in vitro oscillator using control-theoretic tools  + (2010c)
• Receding Horizon Temporal Logic Planning  + (2010d)
• Delay-Based Controller Design for Continuous-Time and Hybrid Applications  + (2010e)
• Resource optimisation in a wireless sensor network with guaranteed estimator performance  + (2010f)
• Bootstrapping bilinear models of robotic sensorimotor cascades  + (2010g)
• Networks with the Smallest Average Distance and the Largest Average Clustering  + (2010h)
• Dynamics and Stability of Low Reynolds Number Swimming Near a Wall  + (2010i)
• Stability and Performance of Non-Homogeneous Multi-Agent Systems on a Graph  + (2010j)
• Decentralized Multi-Agent Optimization via Dual Decomposition  + (2010k)
• Distributed Synthesis of Control Protocols for Smart Camera Networks  + (2010l)
• Quantification and Minimization of Crosstalk Sensitivity in Networks  + (2010m)
• TuLiP: A Software Toolbox for Receding Horizon Temporal Logic Planning  + (2010n)
• Fault-Tolerant Controller Design with Applications in Power Systems and Synthetic Biology  + (2010p)
• A group-theoretic approach to formalizing bootstrapping problems  + (2011a)
• Geometric trajectory filtering via numerical conformal mapping  + (2011b)
• Distributed Power Allocation for Vehicle Management Systems  + (2011c)
• Uncertain semantics, representation nuisances, and necessary invariance properties of bootstrapping agents  + (2011d)
• Analysis and design of a synthetic transcriptional network for exact adaptation  + (2011e)
• A hovercraft robot that uses insect-inspired visual autocorrelation for motion control in a corridor  + (2011g)
• Backtracking temporal logic synthesis for uncertain environments  + (2011h)
• Learning diffeomorphism models of robotic sensorimotor cascades  + (2011i)
• Fault detection and isolation from uninterpreted data in robotic sensorimotor cascades  + (2011j)
• Decentralised minimal-time dynamic consensus  + (2011k)
• Delay-Based Approximations of Biological Systems for Analysis and Design  + (2011l)
• Robust Control of Uncertain Markov Decision Processes with Temporal Logic Specifications  + (2011m)
• Parametric Delay-margin Maximization of Consensus Network Using Local Control Scheme  + (2011n)
• Temporal Logic Control of Switched Affine Systems with an Application in Fuel Balancing  + (2011o)
• Synthesis of Switching Protocols from Temporal Logic Specifications  + (2011p)
• On Synthesizing Robust Discrete Controllers under Modeling Uncertainty  + (2011q)
• Timing molecular motion and production with a synthetic transcriptional clock  + (2011r)
• Extremal Properties of Complex Networks  + (2011s)
• Stabilization of Feedback Systems via Distribution of Delays  + (2012a)
• Towards Formal Synthesis of Reactive Controllers for Dexterous Robotic Manipulation  + (2012b)
• Synthesis of Reactive Control Protocols for Differentially Flat Systems  + (2012c)
• Bisimulations for Reasoning about Input-to-State Stability Properties of Hybrid Systems  + (2012d)
• Performance Metrics for a Biomolecular Step Response  + (2012e)
• Reactive Protocols for Aircraft Electric Power Distribution  + (2012g)
• Quantifying Crosstalk in Biochemical Systems  + (2012h)
• Optimal Control with Weighted Average Costs and Temporal Logic Specifications  + (2012i)
• Synthesis of Reactive Switching Protocols from Temporal Logic Specifications  + (2012j)
• Robot Navigation in Dense Human Crowds: the Case for Cooperation  + (2012k)
• Motion planning in observations space with learned diffeomorphism models  + (2012l)
• Patching task-level robot controllers based on a local μ-calculus formula  + (2012m)
• Efficient reactive controller synthesis for a fragment of linear temporal logic  + (2012n)
• Just-in-time synthesis for motion planning with temporal logic  + (2012o)
• Biomolecular resource utilization in elementary cell-free gene circuits  + (2012p)

• Design and Implementation of a Biomolecular Circuit for Tracking Protein Concentration  + (2012q)

• Convex optimal uncertainty quantification: Algorithms and a case study in energy storage placement for power grids  + (2012r)
• Computing Augmented Finite Transition Systems to Synthesize Switching Protocols for Polynomial Switched Systems  + (2012s)
• Feedback architectures to regulate flux of components in artificial gene networks  + (2012t)
• Pre-orders for Reasoning about Input-to-State Stability Properties of Hybrid Systems  + (2012u)
• An Aircraft Electric Power Testbed for Validating Automatically Synthesized Reactive Control Protocols  + (2012v)
• A Domain-Specific Language for Reactive Control Protocols for Aircraft Electric Power Systems  + (2012w)
• Stability of Discrete Time Systems with Stochastically Delayed Feedback  + (2012x)
• Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response  + (2012y)
• Synthesis of Control Protocols for Autonomous Systems  + (2012z)
• Synthesis of Reactive Protocols for Vehicle-to-Vehicle Communication  + (2012z)
• Resource Competition as a Source of Non-Minimum Phase Behavior in Transcription-Translation Systems  + (2013b)
• Modeling Environmental Disturbances with the Chemical Master Equation  + (2013b)
• Optimal Control of Non-deterministic Systems for a Computationally Efficient Fragment of Temporal Logic  + (2013b)
• Temperature Dependence of Biomolecular Circuit Designs  + (2013b)
• Dynamic State Estimation in Distributed Aircraft Electric Control Systems via Adaptive Submodularity  + (2013b)
• Reverse Engineering Combination Therapies for Evolutionary Dynamics of Disease: An Hinfty Approach  + (2013b)
• An In Silico Modeling Toolbox for Rapid Prototyping of Circuits in a Biomolecular “Breadboard” System  + (2013b)
• Automaton-Guided Controller Synthesis for Nonlinear Systems with Temporal Logic  + (2013c)
• Optimal Control of Nonlinear Systems with Temporal Logic Specifications  + (2013d)
• A robust model predictive control algorithm augmented with a reactive safety mode  + (2013e)
• Synthesis and Validation of Control Software For A Vehicular Electric Power Distribution Testbed  + (2013f)
• Optimization-based Control of Nonlinear Systems with Linear Temporal Logic Specifications  + (2013g)
• Moving bounding boxes and incremental synthesis for dynamic obstacles  + (2013g)
• Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system  + (2013h)
• Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology  + (2013i)
• Efficient control synthesis for augmented finite transition systems with an application to switching protocols  + (2013j)
• Collaborative System Identification via Parameter Consensus  + (2013j)
• Synthesis of Correct-by-construction Control Protocols for Hybrid Systems Using Partial State Information  + (2013j)
• A Scalable Formulation for Engineering Combination Therapies for Evolutionary Dynamics of Disease  + (2013j)
• A Compositional Approach to Stochastic Optimal Control with Temporal Logic Specifications  + (2013j)
• Time-Delayed Feedback Channel Design: Discrete Time H infty Approach  + (2013j)
• Exact Stability Analysis of Discrete-Time Linear Systems with Stochastic Delays  + (2013j)
• Negative autoregulation matches production and demand in synthetic transcriptional networks  + (2013k)
• System identification of phosophorylation based insulator in a cell-free in vitro transcription-translation system  + (2013l)
• Implementation And Simulation Of Phosphorylation-Based Insulator In Transcription-Translation Platform  + (2013l)
• Analysis of Delays in Transcriptional Signaling Networks with Time-Varying Temperature-Dependent Rate Coefficients  + (2013l)
• Specification and Synthesis of Reactive Protocols for Aircraft Electric Power Distribution  + (2013m)
• Design and implementation of a synthetic biomolecular concentration tracker  + (2013n)
• Resource usage and gene circuit performance characterization in a cell-free ‘breadboard’  + (2013o)
• Convex Optimal Uncertainty Quantification  + (2013p)
• Bootstrapping bilinear models of simple vehicles  + (2013q)
• Pre-orders for Reasoning about Stability Properties with respect to Input of Hybrid Systems  + (2013r)
• Population diversification in a yeast metabolic program promotes anticipation of environmental shifts  + (2014a)
• A Contract-Based Methodology for Aircraft Electric Power System Design  + (2014b)
• Negative Feedback Facilitates Temperature Robustness in Biomolecular Circuit Dynamics  + (2014c)
• Modeling the Effects of Compositional Context on Promoter Activity in an E. Coli Extract based Transcription-Translation System  + (2014d)
• Designing Robustness to Temperature in a Feedforward Loop Circuit  + (2014d)
• Model Predictive Control with Signal Temporal Logic Specifications  + (2014d)
• Privacy Preserving Average Consensus  + (2014d)
• Hot-swapping robot task goals in reactive formal synthesis  + (2014d)
• Synthesizing Combination Therapies for Evolutionary Dynamics of Disease for Nonlinear Pharmacodynamics  + (2014d)
• Strategy-Driven Partitioning into Switching Modes for Piecewise-Affine Systems with Continuous Environments  + (2014d)
• Synthetic circuit for exact adaptation and fold-change detection  + (2014e)
• A Compositional Approach to Stochastic Optimal Control with Co-safe Temporal Logic Specifications  + (2014f)
• Engineering Transcriptional Regulator Effector Specificity Through Rational Design and Rapid Prototyping  + (2014g)
• Protein degradation in a TX-TL cell-free expression system using ClpXP protease  + (2014g)
• Synthetic logic circuits using RNA aptamer against T7 RNA polymerase  + (2014h)
• Variable Elimination for Scalable Receding Horizon Temporal Logic Planning  + (2014i)
• An Iterative Abstraction Algorithm for Reactive Correct-by-Construction Controller Synthesis  + (2014j)
• Online Horizon Selection in Receding Horizon Temporal Logic Planning  + (2014j)
• Reactive Synthesis from Signal Temporal Logic Specifications  + (2014j)
• Cross-entropy Temporal Logic Motion Planning  + (2014j)
• A State-space Realization Approach to Set Identification of Biochemical Kinetic Parameters  + (2014k)
• A Risk-Aware Architecture for Resilient Spacecraft Operations  + (2014l)
• Characterization of minimum inducer separation time for a two-input integrase-based event detector  + (2014m)
• Systematic Design and Implementation of a Novel Synthetic Fold-Change Detector Biocircuit In Vivo  + (2014m)
• Robust Model Predictive Control for Signal Temporal Logic Synthesis  + (2014n)
• Multi-dimensional state estimation in adversarial environment  + (2015a)
• Rapid prototyping of biomolecular circuits through module characterization in cell-free expression systems  + (2015a)
• Prototyping 1,4-butanediol (BDO) biosynthesis pathway in a cell-free transcription-translation (TX-TL) system  + (2015b)
• Design of a Toolbox of RNA Thermometers  + (2015b)
• Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (2015b)
• Synthesis from multi-paradigm specifications  + (2015c)
• Global Dynamical Structure Reconstruction from Reconstructed Dynamical Structure Subnetworks: Applications to Biochemical Reaction Networks  + (2015d)
• Quantitative Performance Bounds in Biomolecular Circuits due to Temperature Uncertainty  + (2015d)
• Control System Analysis on Symmetric Cones  + (2015d)
• Synthesis of Distributed Longitudinal Control 1 Protocols for a Platoon of Autonomous Vehicles  + (2015d)
• Engineering Principles of Synthetic Biochemical Oscillators with Negative Cyclic Feedback  + (2015d)
• A stochastic framework for the design of transient and steady state behavior of biochemical reaction networks  + (2015d)
• Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions  + (2015e)
• Application of Correct-by-Construction Principles for a Resilient Risk-Aware Architecture  + (2015f)
• The effects of time-varying temperature on delays in genetic networks  + (2015g)
• Linear System Identifiability from Distributional and Time Series Data  + (2015h)
• Symbolic construction of GR(1) contracts for systems with full information  + (2015h)
• Rapid cell-free forward engineering of novel genetic ring oscillators  + (2015i)
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (2015j)
• Use of population-level cell-state switching for recording transient inducer pulses  + (2015j)
• Rapid in vitro engineering of 16 two-input logic gates  + (2015j)
• Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications  + (2015k)
• An analytical approach to bistable biological circuit discrimination using real algebraic geometry  + (2015l)
• Interfacing TuLiP with the JPL Statechart Autocoder: Initial progress toward synthesis of flight software from formal specifications  + (2015m)
• Model Predictive Control for an Uncertain Smart Thermal Grid  + (2015n)
• Model Predictive Control for Signal Temporal Logic Specifications  + (2016a)
• Design Space Exploration of the Violacein Pathway in Escherichia coli Based Cell-Free System  + (2016b)
• Design and application of stationary phase combinatorial promoters  + (2016b)
• The role of single occupancy effects on integrase dynamics in a cell-free system  + (2016b)
• Stochastic Gene Expression in Single Gene Oscillator Variants  + (2016b)
• Synthesis of Control Protocols for Switched Electrical Power Systems for Commercial Applications with Safety Specifications  + (2016c)
• A population-based temporal logic gate for timing and recording chemical events  + (2016d)
• Control design for hybrid systems with TuLiP: The temporal logic planning toolbox  + (2016e)
• Connected Cruise Control Design Using Probabilistic Model Checking  + (2016f)
• Enhancing tolerance to unexpected jumps in GR(1) games  + (2016g)
• Fast Automatic Verification of Large-Scale Systems with Lookup Tables  + (2016h)
• The Effect of Compositional Context on Synthetic Gene Networks  + (2016i)
• Quantifying Resource Competition and its Effects in the TX-TL System  + (2016k)
• A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response  + (2016l)
• Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (2016x)
• Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli  + (2017a)
• Engineering pulsatile communication in bacterial consortia  + (2017a)
• Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology  + (2017a)
• Hiding variables when decomposing specifications into GR(1) contracts  + (2017b)
• Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis  + (2017b)
• Population regulation in microbial consortia using dual feedback control  + (2017b)
• Learning-Based Abstractions for Nonlinear Constraint Solving  + (2017c)
• Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States  + (2017d)
• Synthesis of Correct-by-Construction Behavior Trees  + (2017e)
• Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks  + (2017e)
• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  + (2017f)
• Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli  + (2017g)
• Layering assume-guarantee contracts for hierarchical system design  + (2017h)
• System-level studies of a cell-free transcription-translation platform for metabolic engineering  + (2017i)
• Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology  + (2017j)
• Length and time scales of cell-cell signaling circuits in agar  + (2017k)
• Control of bacterial population density with population feedback and molecular sequestration  + (2017k)
• Modeling Dynamic Transcriptional Circuits with CRISPRi  + (2017k)
• Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams  + (2017l)
• Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations  + (2017m)
• Single day construction of multi-gene circuits with 3G assembly  + (2018a)
• Long-distance communication in synthetic bacterial consortia through active signal propagation  + (2018a)
• Voluntary lane-change policy synthesis with reactive control improvisation  + (2018b)
• Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts  + (2018b)
• Role of interaction network topology in controlling microbial population in consortia  + (2018b)
• On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3  + (2018c)
• Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability  + (2018d)
• A modal interface contract theory for guarded input/output automata with an application in traffic system design  + (2018d)
• Risk-aware motion planning for automated vehicle among human-driven cars  + (2018d)
• Robust Estimation Framework with Semantic Measurements  + (2018d)
• End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks  + (2018e)
• Inverse Abstraction of Neural Networks Using Symbolic Interpolation  + (2018e)
• Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits  + (2018f)
• Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia  + (2018f)
• Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems  + (2018g)
• Guidelines for Designing the Antithetic Feedback Motif  + (2018g)
• Proof of concept continuous event logging in living cells  + (2019b)
• Control of density and composition in an engineered two-member bacterial community  + (2019b)
• Design of a genetic layered feedback controller in synthetic biological circuitry  + (2019b)
• Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation  + (2019c)
• Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits  + (2019c)
• Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design  + (2019c)
• Towards Assume-Guarantee Profiles for Autonomous Vehicles  + (2019d)
• A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression  + (2019e)
• An automated model reduction tool to guide the design and analysis of synthetic biological circuits  + (2019f)
• Contracts of Reactivity  + (2019g)
• Analysis of primitive genetic interactions for the design of a genetic signal differentiator  + (2019g)
• Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking  + (2019g)
• Counter-example Guided Learning of Bounds on Environment Behavior  + (2019h)
• Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits  + (2019i)
• Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli  + (2019i)
• A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology  + (2019i)
• Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations  + (2019i)
• Learning pose estimation for UAV autonomous navigation and landing using visual-inertial sensor data  + (2019i)
• Intermittent Connectivity for Exploration in Communication-Constrained Multi-Agent Systems  + (2019k)
• Invariant Sets for Integrators and Quadrotor Obstacle Avoidance  + (2019l)
• Risk-Averse Planning Under Uncertainty  + (2019l)
• Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA  + (2019m)
• Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli  + (2019x)
• Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions  + (2020a)
• Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop  + (2020b)
• A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression  + (2020c)
• Planning and Optimization for Multi-Robot Planetary Cave Exploration under Intermittent Connectivity Constraints  + (2020c)
• Analysis of Circuits for Dosage Control in Microbial Populations  + (2020d)
• Synthetic mammalian signaling circuits for robust cell population control  + (2020i)
• Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions  + (2020i)
• Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations  + (2020i)
• Systems Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain Axis  + (2020i)
• Reactive motion planning with probabilistic safety guarantees  + (2020k)
• A MATLAB toolbox for modeling genetic circuits in cell-free systems  + (2021a)
• Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles  + (2021c)
• Time-Optimal Navigation in Uncertain Environments with High-Level Specifications  + (2021c)
• Limits of probabilistic safety guarantees when considering human uncertainty  + (2021c)
• Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture  + (2021c)
• Robustness Guarantees for Structured Model Reduction of Dynamical Systems  + (2021c)
• The Python Control Systems Library (python-control)  + (2021c)
• Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems  + (2021e)
• A Method for Cost-Effective and Rapid Characterization of Genetic Parts  + (2021e)
• Constrained risk-averse Markov decision processes  + (2021e)
• Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications  + (2021m)
• Data-driven network models for genetic circuits from time-series data with incomplete measurements  + (2021m)
• How to model DNA replication in stochastic models of synthetic genetic circuits (and why)  + (2021n)
• Risk-Averse Decision Making Under Uncertainty  + (2021n)
• Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates  + (2021x_)
• Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models  + (2022a)
• Towards Better Test Coverage: Merging Unit Tests for Autonomous Systems  + (2022b)
• From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology  + (2022b)
• Robust Safe Control Synthesis with Disturbance Observer-Based Control Barrier Functions  + (2022b)
• Evaluation Metrics for Object Detection for Autonomous Systems  + (2022c)
• Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks  + (2022d)
• Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows  + (2022d)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (2022k)
• Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli  + (2022k)
• Minimally Constrained Testing for Autonomy with Temporal Logic Specifications  + (2022m)
• Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline  + (2022n)
• BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts  + (2022o)
• Reasoning over Test Specifications using Assume-Guarantee Contracts  + (2023a)
• Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications  + (2023a)
• Context-Aided Variable Elimination for Requirement Engineering  + (2023a)
• Evaluation Metrics of Object Detection for Quantitative System-Level Analysis of Autonomous Systems  + (2023b)
• A Model-Free Algorithm for Extremely Resilient Navigation  + (2023c)
• A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths  + (2023c)
• Control education for societal-scale challenges: A community roadmap  + (2023c)
• Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation  + (2023c)
• Addressable and adaptable intercellular communication via DNA messaging  + (2023d)
• Development of cell-free transcription-translation systems in three soil Pseudomonads  + (2023f)
• Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design  + (2023h)
• A chemical reaction network model of PURE  + (2023h)
• Efficient local validation of partially ordered models via Baysian directed sampling  + (2023i)
• Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation  + (2023j)
• TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering  + (2023k)
• Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency  + (2024a)
• A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology  + (2024b)
• Specifying and Analyzing Networked and Layered Control Systems Operating on Multiple Clocks  + (2024c)
• Impact of Chemical Dynamics of Commercial PURE Systems on Malachite Green Aptamer Fluorescence  + (2024d)
• Flow-Based Synthesis of Reactive Tests for Discrete Decision-Making Systems with Temporal Logic Specifications  + (2024e)
• Theory-Based Engineering of Biomolecular Circuits in Living Cells  + (AFOSR BRI)
• Rules of Composition in Synthetic Biology Across Scales of Complexity: Theory and Tools  + (AFOSR Syn Bio MURI)
• Formal Methods for V&V and T&E of Autonomous Systems  + (AFOSR T&E)
• Layered T&E for Safety-Critical Autonomous Systems  + (AFOSR T&E2)
• Field-Programmable, Recombinase-Based Biomolecular Circuits  + (AICB MRSB)
• Engineering Durable Cell-Free Biological Capabilities for Advanced Sensing and Prototyping  + (ARL cellfree)
• Enabling Technologies for Cell-Silicon Interfacing  + (ARL19 hybrid)
• Fundamental Biological Factors Underlying Human Performance: From Molecular Diagnostics and Detection to Behavior and Systems Biology  + (ARL19 zebrafish)
• Center for Harnessing Microbiota from Military Environments (CHARMME)  + (ARO CHARMME)
• Dissecting microbiome-gut-brain circuits for microbial modulation of host cognition in response to diet and stress  + (ARO GMB)
• Biomolecular Circuits for Rapid Detection and Response to Environmental Events  + (ARO ICB)
• Cell-Free Expression of Membrane Proteins with Applications to Drug Discovery  + (Amgen TX-TL)
• Deciphering the Rules of Nucleus Architecture with Synthetic Cells and Organelles  + (BBSRC SynNucleus)
• Correct-by-Construction Synthesis of Control Protocols for Aerospace Systems  + (Boeing)
• Improvement of E. coli transcription-translation (TX-TL) system  + (Caltech Grubstake)
• Assurance for Learning Enabled Systems  + (DARPA ALES)
• Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  + (DARPA BioCon)
• Temporal Logic Specifications for Control System Design in Automotive Systems  + (DENSO CPM)
• Programmable Molecular Technology Initiative  + (GBMF PMTI)
• Establishing microfluidic cell-free systems for the rapid prototyping of synthetic genetic networks  + (HFSP TX-TL)
• Design of Digitally Controlled Bacterial Circuits for Bioenabled Materials  + (ICB Materials)
• Genetic Circuits for Multi-Cellular Machines  + (ICB Microbial)
• Engineering Reliable Genetic Circuits for Characterization and Remediation of Soil Ecologies  + (ICB Soil Syn Bio)
• Control of Functional Bioenabled Materials using Synthetic Cells  + (ICB Synthetic Biofilms)
• Design and Implementation of Multi-Component Synthetic Cells  + (ICB Synthetic Cell)
• Multi-Layer, Composable and Programmable Biomolecular Circuits for Microbial Consortia  + (ICB multilayer)
• Synthesizing flight software (FSW) discrete controllers from formal specifications  + (JPL CIF17)