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List of results
- Inverse Abstraction of Neural Networks Using Symbolic Interpolation + (Conference paper)
- Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits + (Conference paper)
- Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia + (Conference paper)
- Role of interaction network topology in controlling microbial population in consortia + (Conference paper)
- Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation + (Conference paper)
- Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits + (Conference paper)
- Control of density and composition in an engineered two-member bacterial community + (Conference paper)
- An automated model reduction tool to guide the design and analysis of synthetic biological circuits + (Conference paper)
- Design of a genetic layered feedback controller in synthetic biological circuitry + (Conference paper)
- Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design + (Conference paper)
- Contracts of Reactivity + (Conference paper)
- Counter-example Guided Learning of Bounds on Environment Behavior + (Conference paper)
- Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits + (Conference paper)
- Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli + (Conference paper)
- A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology + (Conference paper)
- Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations + (Conference paper)
- Intermittent Connectivity for Exploration in Communication-Constrained Multi-Agent Systems + (Conference paper)
- Invariant Sets for Integrators and Quadrotor Obstacle Avoidance + (Conference paper)
- Risk-Averse Planning Under Uncertainty + (Conference paper)
- Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions + (Conference paper)
- A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression + (Conference paper)
- Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture + (Conference paper)
- Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications + (Conference paper)
- Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems + (Conference paper)
- Planning and Optimization for Multi-Robot Planetary Cave Exploration under Intermittent Connectivity Constraints + (Conference paper)
- Learning pose estimation for UAV autonomous navigation and landing using visual-inertial sensor data + (Conference paper)
- Reactive motion planning with probabilistic safety guarantees + (Conference paper)
- Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions + (Conference paper)
- Time-Optimal Navigation in Uncertain Environments with High-Level Specifications + (Conference paper)
- Limits of probabilistic safety guarantees when considering human uncertainty + (Conference paper)
- Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations + (Conference paper)
- Constrained risk-averse Markov decision processes + (Conference paper)
- Systems Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain Axis + (Conference paper)
- Risk-Averse Decision Making Under Uncertainty + (Conference paper)
- Robustness Guarantees for Structured Model Reduction of Dynamical Systems + (Conference paper)
- The Python Control Systems Library (python-control) + (Conference paper)
- Towards Better Test Coverage: Merging Unit Tests for Autonomous Systems + (Conference paper)
- From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology + (Conference paper)
- Robust Safe Control Synthesis with Disturbance Observer-Based Control Barrier Functions + (Conference paper)
- Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows + (Conference paper)
- Evaluation Metrics for Object Detection for Autonomous Systems + (Conference paper)
- Minimally Constrained Testing for Autonomy with Temporal Logic Specifications + (Conference paper)
- Reasoning over Test Specifications using Assume-Guarantee Contracts + (Conference paper)
- Evaluation Metrics of Object Detection for Quantitative System-Level Analysis of Autonomous Systems + (Conference paper)
- A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths + (Conference paper)
- Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency + (Conference paper)
- Specifying and Analyzing Networked and Layered Control Systems Operating on Multiple Clocks + (Conference paper)
- Towards Assume-Guarantee Profiles for Autonomous Vehicles + (Conference paper (submitted))
- A Robust Nonlinear Model Predictive Control Algorithm with a Safety Mode + (Conference paperp)
- TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering + (Conference poster)
- Context-Aided Variable Elimination for Requirement Engineering + (Conference submission)
- A Model-Free Algorithm for Extremely Resilient Navigation + (Conference submission)
- Efficient local validation of partially ordered models via Baysian directed sampling + (Conference submission)
- Nonholonomic control systems: from steering to stabilization with sinuoids + (Conference version)
- Equilibrium Controllability for a Class of Mechanical Systems + (Conferencepaper)
- Control on the Sphere and Reduced Attitude Stabilization + (Converence paper)
- Rapid in vitro engineering of 16 two-input logic gates + (Downloading and printing FAQ)
- A Motion Planner for Nonholonomic Robots + (Downloading and printing FAQ)
- Trajectory generation for the N-trailer problem using Goursat normal form + (ERL memo)
- Future Directions in Control, Dynamics, and Systems: Overview, Grand Challenges, and New Courses + (Journal submission)
- Effective Transition Rates for Epitaxial Growth Using Fast Modulation + (Journal submission)
- Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems + (Journal submission)
- Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response + (Journal Paper)
- Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system + (Journal Submission)
- Synthesis and Validation of Control Software For A Vehicular Electric Power Distribution Testbed + (Journal Submission)
- UAV as a Reliable Wingman: A Flight Demonstration + (Journal Submission)
- Optimal LQG Control Across a Packet-Dropping Link + (Journal Submission)
- Design and implementation of a synthetic biomolecular concentration tracker + (Journal article)
- Rapid cell-free forward engineering of novel genetic ring oscillators + (Journal paper)
- Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions + (Journal paper)
- Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (Journal paper)
- Synthetic circuit for exact adaptation and fold-change detection + (Journal paper)
- A Contract-Based Methodology for Aircraft Electric Power System Design + (Journal paper)
- Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology + (Journal paper)
- A robust model predictive control algorithm augmented with a reactive safety mode + (Journal paper)
- Synthesis of Reactive Switching Protocols from Temporal Logic Specifications + (Journal paper)
- Timing molecular motion and production with a synthetic transcriptional clock + (Journal paper)
- Discrete State Estimators for Systems on a Lattice + (Journal paper)
- Modelling Efficient Pisciform Swimming for Control + (Journal paper)
- An analytical approach to bistable biological circuit discrimination using real algebraic geometry + (Journal paper)
- A population-based temporal logic gate for timing and recording chemical events + (Journal paper)
- Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks + (Journal paper)
- Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks + (Journal paper)
- Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli + (Journal paper)
- Layering assume-guarantee contracts for hierarchical system design + (Journal paper)
- Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology + (Journal paper)
- On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3 + (Journal paper)
- Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (Journal paper)
- Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop + (Journal paper)
- A MATLAB toolbox for modeling genetic circuits in cell-free systems + (Journal paper)
- Guidelines for Designing the Antithetic Feedback Motif + (Journal paper)
- Data-driven network models for genetic circuits from time-series data with incomplete measurements + (Journal paper)
- Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models + (Journal paper)
- Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks + (Journal paper)
- Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates + (Journal paper)
- BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts + (Journal paper)
- Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications + (Journal paper)
- Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape + (Journal paper)
- Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles + (Journal paper)
- Control education for societal-scale challenges: A community roadmap + (Journal paper)
- Development of cell-free transcription-translation systems in three soil Pseudomonads + (Journal paper)
- Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation + (Journal paper)
- Addressable and adaptable intercellular communication via DNA messaging + (Journal paper)
- Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli + (Journal paper)
- A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology + (Journal paper)
- Impact of Chemical Dynamics of Commercial PURE Systems on Malachite Green Aptamer Fluorescence + (Journal paper)
- Flow-Based Synthesis of Reactive Tests for Discrete Decision-Making Systems with Temporal Logic Specifications + (Journal paper)
- The effects of time-varying temperature on delays in genetic networks + (Journal submission)
- Bootstrapping bilinear models of simple vehicles + (Journal submission)
- Convex Optimal Uncertainty Quantification + (Journal submission)
- Specification and Synthesis of Reactive Protocols for Aircraft Electric Power Distribution + (Journal submission)
- Synthesis of Control Protocols for Autonomous Systems + (Journal submission)
- Cone Invariance and Rendezvous of Multiple Agents + (Journal submission)
- State Estimation Over Packet Dropping Networks Using Multiple Description Coding + (Journal submission)
- On a Stochastic Sensor Selection Algorithm with Applications in Sensor Scheduling and Sensor Coverage + (Journal submission)
- Receding Horizon Control of a Vectored Thrust Flight Experiment + (Journal submission)
- Model Reduction for Compressible Flows using POD and Galerkin Projection + (Journal submission)
- Model Predictive Control for Signal Temporal Logic Specifications + (Journal submission)
- The Effect of Compositional Context on Synthetic Gene Networks + (Journal submission)
- A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression + (Journal submission)
- Analysis of primitive genetic interactions for the design of a genetic signal differentiator + (Journal submission)
- Synthetic mammalian signaling circuits for robust cell population control + (Journal submission)
- Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline + (Journal submission)
- Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design + (Journal submission)
- A Method for Cost-Effective and Rapid Characterization of Genetic Parts + (Journal submissions)
- Delay-dependent Stability of Genetic Regulatory Networks + (MS thesis)
- Future Directions in Control in an Information-Rich World + (Magazine article)
- Appealing to a Non-traditional Audience: A New Approach to Teaching Feedback + (Magazine article)
- Distributed Computation for Cooperative Control + (Magazine submission)
- Experiments in Planar Manipulation and Grasping + (Masters Report)
- Rapid prototyping of biomolecular circuits through module characterization in cell-free expression systems + (Masters Thesis)
- On Measures of Non-Integrability of Pfaffian Systems + (Paper)
- Modeling and Control of Epitaxial Thin Film Growth + (Ph.D. Dissertation)
- Distributed Gradient Systems and Dynamic Coordination + (PhD Dissertation)
- Bio-Inspired Visuomotor Convergence in Navigation and Flight Control Systems + (PhD Dissertation)
- Coarse analysis of multiscale systems: diffuser flows, charged particle motion, and connections to averaging theory + (PhD Dissertation)
- State Estimation in Multi-Agent Decision and Control Systems + (PhD Dissertation)
- Real-Time Optimal Trajectory Generation for Constrained Dynamical Systems + (PhD Dissertation)
- Effects of Actuator Limits in Bifurcation Control with Applications to Active Control of Fluid Instabilities in Turbomachinery + (PhD Dissertation)
- Robotic Manipulation with Flexible Link Fingers + (PhD Dissertation)
- Robotic Control and Nonholonomic Motion Planning + (PhD Dissertation)
- Real-time trajectory generation for constrained nonlinear dynamical systems using non-uniform rational B-spline basis functions + (PhD dissertation)
- Synthetic logic circuits using RNA aptamer against T7 RNA polymerase + (Preprint)
- Population diversification in a yeast metabolic program promotes anticipation of environmental shifts + (Preprint)
- Bootstrapping bilinear models of robotic sensorimotor cascades + (Preprint)
- TuLiP: A Software Toolbox for Receding Horizon Temporal Logic Planning + (Preprint)
- Quantification and Minimization of Crosstalk Sensitivity in Networks + (Preprint)
- Distributed Synthesis of Control Protocols for Smart Camera Networks + (Preprint)
- Decentralized Multi-Agent Optimization via Dual Decomposition + (Preprint)
- Stability and Performance of Non-Homogeneous Multi-Agent Systems on a Graph + (Preprint)
- Dynamics and Stability of Low Reynolds Number Swimming Near a Wall + (Preprint)
- Networks with the Smallest Average Distance and the Largest Average Clustering + (Preprint)
- Resource optimisation in a wireless sensor network with guaranteed estimator performance + (Preprint)
- Delay-Based Controller Design for Continuous-Time and Hybrid Applications + (Preprint)
- Receding Horizon Temporal Logic Planning + (Preprint)
- Tuning a synthetic in vitro oscillator using control-theoretic tools + (Preprint)
- Synthesis of Embedded Control Systems with High Sampling Frequencies + (Preprint)
- A bio-plausible design for visual pose stabilization + (Preprint)
- Automatic Synthesis of Robust Embedded Control Software + (Preprint)
- Autonomous Driving in Urban Environments: Approaches, Lessons and Challenges + (Preprint)
- Receding Horizon Control for Temporal Logic Specifications + (Preprint)
- Experimental Demonstration of the Dynamics and Stability of a Low Reynolds Number Swimmer Near a Plane Wall + (Preprint)
- Limits on the network sensitivity function for multi-agent systems on a graph + (Preprint)
- Simple Delay-Based Implementation of Continuous-Time Controllers + (Preprint)
- Controlling biological networks by time-delayed signals + (Preprint)
- A bootstrappable bio-plausible design for visual pose stabilization + (Preprint)
- Flight dynamics and control of evasive maneuvers: the fruit fly's takeoff + (Preprint)
- Quantized Consensus via Adaptive Stochastic Gossip Algorithm + (Preprint)
- A bio-plausible design for visual attitude stabilization + (Preprint)
- Receding Horizon Temporal Logic Planning for Dynamical Systems + (Preprint)
- Geometric Control of Particle Manipulation in a Two-Dimensional Fluid + (Preprint)
- Design of insulating devices for in vitro synthetic circuits + (Preprint)
- Compositional stability analysis based on dual decomposition + (Preprint)
- Automatic Conversion Software for the Safety Verification of Goal-Based Control Programs + (Preprint)
- Probabilistic Safety Analysis of Sensor-Driven Hybrid Automata + (Preprint)
- On Quantized Consensus by Means of Gossip Algorithm -- Part II: Convergence Time + (Preprint)
- On Quantized Consensus by Means of Gossip Algorithm -- Part I: Convergence Proof + (Preprint)
- Real-valued average consensus over noisy quantized channels + (Preprint)
- Control Program Verification for a Sample Titan Aerobot Mission + (Preprint)
- Optimal Sensor Hop Selection: Sensor Energy Minimization and Network Lifetime Maximization with Guaranteed System Performance + (Preprint)
- Kalman Filtering Over A Packet-delaying Network: A Probabilistic Approach + (Preprint)
- Kalman Filtering Over A Packet Dropping Network: A Probabilistic Perspective + (Preprint)
- Design and performance of in vitro transcription rate regulatory circuit + (Preprint)
- Probabilistic Performance of State Estimation Across a Lossy Network + (Preprint)
- Formal Verification of an Autonomous Vehicle System + (Preprint)
- Analysis of Dynamics in Escaping Flight Initiation in Drosophila + (Preprint)
- Failure Probability of Verifiable Goal-based Control Programs due to State Estimation Uncertainty + (Preprint)
- Model reduction of interconnected linear systems + (Preprint)
- Distributed Mission and Contingency Management for the DARPA Urban Challenge + (Preprint)
- Situational Reasoning for Road Driving in an Urban Environment + (Preprint)
- A Framework for Low--Observable Tra jectory Generation in the Presence of Multiple Radars + (Preprint)
- Control Over a Packet Dropping Network with Norm Bounded Uncertainties + (Preprint)
- Sensing, Navigation and Reasoning Technologies for the DARPA Urban Challenge + (Preprint)
- Estimation schemes for networked control systems using UDP-like communication + (Preprint)
- Flight control in a flapping-wing fruit fly simulator + (Preprint)
- Conversion and Verification Procedure for Goal-Based Control Programs + (Preprint)
- Using Hierarchical Decomposition to Speed Up Average Consensus + (Preprint)
- Estimation Over Wireless Sensor Networks: Tradeoff between Communication, Computation and Estimation Qualities + (Preprint)
- Safety Verification of Fault Tolerant Goal-based Control Programs with Estimation Uncertainty + (Preprint)
- Convergence Properties of Dynamic Agents Consensus Networks with Broken Links + (Preprint)
- Nonlinear Lateral Control Strategy for Nonholonomic Vehicles + (Preprint)
- Optimal LQG control across packet-dropping links + (Preprint)
- Data Transmission over Networks for Estimation and Control + (Preprint)
- Consensus Seeking Using Multi-Hop Relay Protocol + (Preprint)
- Asynchronous Distributed Averaging on Communication Networks + (Preprint)
- Recent research in cooperative control of multivehicle systems + (Preprint)
- Consensus and Cooperation in Networked Multi-Agent Systems + (Preprint)
- Effective Sensor Scheduling Schemes in a Sensor Network by Employing Feedback in the Communication Loop + (Preprint)
- Managing information in networked and multi-agent control systems + (Preprint)
- A Multi-Model Approach to Identification of Biosynthetic Pathways + (Preprint)
- Control Over a Network: Using Actuation Buffers to Reduce Transmission Frequency + (Preprint)
- Analysis of a Digital Clock for Molecular Computing + (Preprint)
- System architectures and environment modeling for high-speed autonomous navigation + (Preprint)
- Alice: An information-rich autonomous vehicle for high-speed desert navigation + (Preprint)
- Linear models for control of cavity flow oscillations + (Preprint)
- Consensus problems in networks of agents with switching topology and time-delays + (Preprint)
- Decomposition of Human Motion into Dynamics Based Primitives with Application to Drawing Tasks + (Preprint)
- Graph Laplacians and Stabilization of Vehicle Formations + (Preprint)
- Differentially Flat Systems with Inequality Constraints: An Approach to Real-Time Feasible Trajectory Generation + (Preprint)
- Nonholonomic Mechanical Systems with Symmetry + (Preprint)
- Rapid Hover to Forward Flight Transitions for a Thrust Vectored Aircraft + (Preprint)
- Decompositions for Control Systems on Manifolds with an Affine Connection + (Preprint)
- Real Time Trajectory Generation for Differentially Flat Systems with Unstable Zero Dynamics + (Preprint)
- Nonlinear Control of Mechanical Systems: A Lagrangian Perspective + (Preprint)
- Geometric Phases, Control Theory, and Robotics + (Preprint)
- Stabilization of Trajectories for Systems with Nonholonomic Constraints + (Preprint)
- Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli + (Preprint)
- Analysis of Circuits for Dosage Control in Microbial Populations + (Preprint)
- Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking + (Preprint)
- How to model DNA replication in stochastic models of synthetic genetic circuits (and why) + (Preprint)
- Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA + (Preprint)
- A chemical reaction network model of PURE + (Preprint)
- Negative autoregulation matches production and demand in synthetic transcriptional networks + (Preprint (bioRxiv))
- Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation + (Preprint (conference poster))
- Bifurcation Control of Rotating Stall with Actuator Magnitude and Rate Limits + (Preprint (parts I & II))
- Cone invariance and rendezvous of multiple agents + (Published version)
- Dynamics and stability of a class of low Reynolds number swimmers near a wall + (Published version)
- To Drop or Not to Drop: Design Principles for Kalman Filtering Over Wireless Fading Channels + (Published version)
- Communication and sensing trade-offs in cooperative mobile networks + (Published version)
- Variational Principles in Constrained Systems: Theory and Experiments + (Technical Report)
- Flat systems, equivalence and trajectory generation + (Technical Report)
- Optimal and Cooperative Control of Vehicle Formations + (Technical Report)
- Protein degradation in a TX-TL cell-free expression system using ClpXP protease + (Technical Report)
- Synthesis of Reactive Protocols for Vehicle-to-Vehicle Communication + (Technical Report)
- Extremal Properties of Complex Networks + (Technical Report)
- Limits on the Network Sensitivity Function for Multi-Agent Systems on a Graph + (Technical Report)
- Distributed Receding Horizon Control with Applications to Multi-Vehicle Formation Stabilization + (Technical Report)
- Tracking for Fully Actuated Mechanical Systems: A Geometric Framework + (Technical Report)
- Nonholonomic Motion Planning: Steering Using Sinusoids + (Technical report)
- A Case Study in Approximate Linearization: The Acrobot Example + (Technical report)
- System-level studies of a cell-free transcription-translation platform for metabolic engineering + (Technical report)
- Control Primitives for Robot Systems + (Technical report (preprint))
- The Mechanics and Control of Robotic Locomotion with Applications to Aquatic Vehicles + (Thesis)
- Autonomous Reorientation of a Manuever-Limited Spacecraft Under Simple Pointing Constraints + (Thesis)