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List of results

• Receding Horizon Control for Temporal Logic Specifications  + (International Conference on Hybrid Systems: Computation and Control (HSCC))
• A bootstrappable bio-plausible design for visual pose stabilization  + (International Conference on Robotics and Automation (ICRA), 2010 (Submitted))
• Automatic Conversion Software for the Safety Verification of Goal-Based Control Programs  + (International Conference on Software Engineering, 2009 (submitted))
• Using Hierarchical Decomposition to Speed Up Average Consensus  + (International Federation of Automatic Control (IFAC) World Congress, 2008 (to appear))
• Estimation Over Wireless Sensor Networks: Tradeoff between Communication, Computation and Estimation Qualities  + (International Federation of Automatic Control (IFAC) World Congress, 2008 (to appear))
• A Robust Nonlinear Model Predictive Control Algorithm with a Safety Mode  + (International Federation of Automatic Control (IFAC) World Congress, 2008)
• Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models  + (International Journal on Robust and Nonlinear Control (IJRNC), 1-29, 2022)
• Situational Reasoning for Road Driving in an Urban Environment  + (International Workshop on Intelligent Vehicle Control Systems (IVCS), 2008 (submitted))
• Distributed Mission and Contingency Management for the DARPA Urban Challenge  + (International Workshop on Intelligent Vehicle Control Systems (IVCS), 2008)
• An analytical approach to bistable biological circuit discrimination using real algebraic geometry  + (J. R. Soc. Interface 2015 12 20150288; DOI: 10.1098/rsif.2015.0288.)
• Recent research in cooperative control of multivehicle systems  + (Journal Of Dynamic Systems Measurement And Control-Transactions Of The Asme, 129:571-583)
• Alice: An information-rich autonomous vehicle for high-speed desert navigation  + (Journal of Field Robotics, 23(9):777-810)
• Linear models for control of cavity flow oscillations  + (Journal of Fluid Mechanics, 547:317-330)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (Journal of Open Source Software (JOSS), 2023)
• Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology  + (Journal of Visualized Experiments (79), e50762, doi:10.3791/50762)
• Data-driven network models for genetic circuits from time-series data with incomplete measurements  + (Journal of the Royal Society Interface 18 (182), 20210413)
• Experiments in Planar Manipulation and Grasping  + (MS Project Report, UC Berkeley, Dec 1988)
• Rapid prototyping of biomolecular circuits through module characterization in cell-free expression systems  + (Masters Thesis, Lund University)
• Delay-dependent Stability of Genetic Regulatory Networks  + (Masters Thesis, Lund University)
• Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates  + (Microbial Biotechnology, 14( 6), 2448– 2462, 2021)
• Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks  + (Nature Communications 13(1):1-13, 2022)
• Regulatory activity revealed by dynamic correlations in gene expression noise  + (Nature Genetics, 40:1493-1498)
• Model reduction of interconnected linear systems  + (Optimal Control Applications and Methods, 2008 (to appear))
• BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts  + (PLoS Computational Biology, 18(4), e1009987, 2022)
• Optimal and Cooperative Control of Vehicle Formations  + (PhD Dissertation)
• Passive Control of Flutter and Forced Response in Bladed Disks via Mistuning  + (PhD Dissertation)
• Effects of Actuator Limits in Bifurcation Control with Applications to Active Control of Fluid Instabilities in Turbomachinery  + (PhD Dissertation, California Institute of Technology, June 2000)
• Coarse analysis of multiscale systems: diffuser flows, charged particle motion, and connections to averaging theory  + (PhD Dissertation, Caltech Aeronautics, May 2005)
• Nonlinear Control of Mechanical Systems: A Reimannian Geometry Approach  + (PhD Dissertation, Caltech, August 1998)
• Nonlinear Control of Rotating Stall and Surge with Axisymmetric Bleed and Air Injection on Axial Flow Compressors  + (PhD Dissertation, Caltech, August 1998)
• Exponential Stabilization of Driftless Nonlinear Control Systems  + (PhD Dissertation, Caltech, Dec 1994)
• Robotic Manipulation with Flexible Link Fingers  + (PhD Dissertation, Caltech, January 1997)
• Trajectory Generation for Nonlinear Control Systems  + (PhD Dissertation, Caltech, Jul 1996)
• Aspects of Geometric Mechanics and Control of Mechanical Systems  + (PhD Dissertation, Caltech, Jun 1995)
• The Mechanics and Control of Robotic Locomotion with Applications to Aquatic Vehicles  + (PhD Dissertation, Caltech, June 1998)
• Differentially Flat Nonlinear Control Systems  + (PhD Dissertation, Caltech, May 1997)
• Nonlinear Control and Modeling of Rotating Stall in an Axial Flow Compressor  + (PhD Dissertation, Caltech, Sep 1996)
• Distributed Gradient Systems and Dynamic Coordination  + (PhD Dissertation, Control and Dynamical Systems)
• Bio-Inspired Visuomotor Convergence in Navigation and Flight Control Systems  + (PhD Dissertation, Control and Dynamical Systems)
• State Estimation in Multi-Agent Decision and Control Systems  + (PhD Dissertation, Control and Dynamical Systems)
• Real-Time Optimal Trajectory Generation for Constrained Dynamical Systems  + (PhD Dissertation, Control and Dynamical Systems)
• Managing information in networked and multi-agent control systems  + (PhD Dissertation, Mechanical Engineering)
• System architectures and environment modeling for high-speed autonomous navigation  + (PhD Dissertation, Mechanical Engineering)
• Robotic Control and Nonholonomic Motion Planning  + (PhD Dissertation, UC Berkeley, Dec 1990)
• Real-time trajectory generation for constrained nonlinear dynamical systems using non-uniform rational B-spline basis functions  + (PhD dissertation, Control and Dynamical Systems, Nov 2007)
• Autonomous Driving in Urban Environments: Approaches, Lessons and Challenges  + (Philosophical Transactions of the Royal Society - A, 2009 (Submitted))
• Controlling biological networks by time-delayed signals  + (Philosophical Transactions of the Royal Society - A, 2009 (Submitted))
• Guidelines for Designing the Antithetic Feedback Motif  + (Physical Biology, 17(5):055002, 2020)
• Dynamics and stability of a class of low Reynolds number swimmers near a wall  + (Physical Review E, 19(4))
• Engineering Transcriptional Regulator Effector Specificity Through Rational Design and Rapid Prototyping  + (Presented at Synthetic Biology: Engineering, Evolution and Design (SEED), 14-18 July 2014)
• Prototyping 1,4-butanediol (BDO) biosynthesis pathway in a cell-free transcription-translation (TX-TL) system  + (Presented at Synthetic Biology: Engineering, Evolution and Design (SEED), 10-13 June 2015)
• Design of a Toolbox of RNA Thermometers  + (Presented at Synthetic Biology: Engineering, Evolution and Design (SEED), 10-13 June 2015)
• Design and Implementation of a Biomolecular Circuit for Tracking Protein Concentration  + (Presented, 2013 American Control Conference (ACC))
• Characterization of minimum inducer separation time for a two-input integrase-based event detector  + (Presented, 2015 Winter q-bio Conference (5 Nov 2014))
• Rapid in vitro engineering of 16 two-input logic gates  + (Presented, 2016 Winter q-Bio)
• Use of population-level cell-state switching for recording transient inducer pulses  + (Presented, 2016 Winter q-Bio (5 Nov 2015))
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (Presented, 2016 Winter q-Bio Conference)
• Applications and Extensions of Goursat Normal Form to Control of Nonlinear Systems  + (Proceedings of the 32nd Conference on Decision and Control<br>December 1993)
• Exponential Stabilization of Driftless Nonlinear Control Systems via Time-varying, Homogeneous Feedback  + (Proceedings of the 32nd Conference on Decision and Control<br>December 1994)
• Geometric Phases, Control Theory, and Robotics  + (Proceedings of the Board on Mathematical Sciences, Science and Technology Symposium, Washington DC, 12 April 1994)
• Consensus and Cooperation in Networked Multi-Agent Systems  + (Proceedings of the IEEE, 95(1):215 - 233, 2007)
• Cone invariance and rendezvous of multiple agents  + (Proceedings of the Institution of Mechanical Engineers, Part G: Journal of Aerospace Engineering, 223(6):779-789)
• Trajectory Generation for Mechanical Systems with Application to Robotic Locomotion  + (Proceedings, 1998 Workshop on Algorithmic Foundations of Robotics)
• Minimally Constrained Testing for Autonomy with Temporal Logic Specifications  + (RSS 2022 Workshop on Envisioning an Infrastructure for Multi-Robot and Collaborative Autonomy Testing and Evaluation)
• Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation  + (SEED 2023)
• Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency  + (SEED, 2024)
• Dynamics and Stability of Low Reynolds Number Swimming Near a Wall  + (SIAM Journal of Applied Dynamical Systems (SIADS), 10(3):1013â1041)
• Analysis of Circuits for Dosage Control in Microbial Populations  + (Senior thesis)
• Simultaneous Stabilization of Stall and Surge via Axisymmetric Air Injection  + (Submitted, 1998 Conference on Control Applications)
• Constrained Trajectory Generation for Microsatellite Formation Flying  + (Submitted, 2001 AIAA Guidance, Navigation and Control Conference)
• J2 Dynamics and Formation Flight  + (Submitted, 2001 AIAA Guidance, Navigation and Control Conference)
• Modeling and Control of Thin Film Morphology Using Unsteady Processing Parameters: Problem Formulation and Initial Results  + (Submitted, 2001 Conference on Decision and Control)
• Model Predictive Control of Coordinated Multi-Vehicle Formations  + (Submitted, 2002 Conference on Decision and Control (CDC))
• Distributed Structural Stabilization and Tracking for Formations of Dynamic Multi-Agents  + (Submitted, 2002 Conference on Decision and Control (CDC))
• Real-Time Constrained Trajectory Generation Applied to a Flight Control Experiment  + (Submitted, 2002 IFAC World Congress)
• Stability Analysis of Interconnected Nonlinear Systems Under Matrix Feedback  + (Submitted, 2003 Conference on Decision and Control (CDC))
• Cooperative Task Planning of Multi-Robot Systems with Temporal Constraints  + (Submitted, 2003 International Conference on Robotics and Automation)
• Sensor Scheduling Algorithms Requiring Limited Computation  + (Submitted, 2004 International Conference on Acoustics, Speech, and Signal Processing (ICASSP))
• A Frequency Domain Condition for Stability of Interconnected MIMO Systems  + (Submitted, 2004 American Control Conference)
• A Constrained Optimization Framework for Wireless Networking in Multi-Vehicle Applications  + (Submitted, 2004 American Control Conference (ACC))
• On the Synthesis of Control Laws for a Network of Autonomous Agents  + (Submitted, 2004 American Control Conference (ACC))
• Ellipsoidal Cones and Rendezvous of Multiple Agents  + (Submitted, 2004 Conference on Decision and Control)
• Polyhedral Cone Invariance Applied to Rendezvous of Multiple Agents  + (Submitted, 2004 Conference on Decision and Control (CDC))
• Nonlinear Trajectory Generation for Unmanned Air Vehicles with Multiple Radars  + (Submitted, 2004 Conference on Decision and Control (CDC))
• Robust Connectivity of Networked Vehicles  + (Submitted, 2004 Conference on Decision and Control (CDC))
• Receding Horizon Control of Multi-Vehicle Formations: A Distributed Implementation  + (Submitted, 2004 Conference on Decision and Control (CDC))
• Discrete State Estimators for a Class of Nondeterministic Hybrid Systems on a Lattice  + (Submitted, 2004 Conference on Decision and Control (CDC))
• Observability of a Class of Hybrid Systems on Bounded Lattices  + (Submitted, 2004 Conference on Decision and Control (CDC))
• Scheduling for Distributed Sensor Networks with Single Sensor Measurement per Time Step  + (Submitted, 2004 International Conference on Robotics and Automation)
• Identification of Decision Rules in a Human-controlled System: Vehicles at a Traffic Intersection  + (Submitted, 2004 International Conference on Robotics and Automation (ICRA))
• On LQG Control Across a Stochastic Packet-Dropping Link  + (Submitted, 2005 American Control Conference (ACC))
• Sensorimotor Convergence in Visual Navigation and Flight Control Systems  + (Submitted, 2005 IFAC World Congress)
• Cascade Discrete-Continuous State Estimators for a Class of Monotone Systems  + (Submitted, 2005 IFAC World Congress)
• Uncertainty-based Sensor Fusion of Range Data for Real-time Digital Elevation Mapping (RTDEM)  + (Submitted, 2005 International Conference on Robotics and Automation)
• On Decentralized Classification using a Network of Mobile Sensors  + (Submitted, 2005 International Conference on Robotics and Automation)
• On the Effect of Quantization on Performance  + (Submitted, 2006 American Control Conference)
• On a Cooperative Pursuit Strategy  + (Submitted, 2006 American Control Conference)
• Optimum Allocation of Computing Resources in Networked Sensing and Control  + (Submitted, 2006 American Control Conference)
• Towards a Packet-based Control Theory - Part II: Rate Issues  + (Submitted, 2006 American Control Conference)
• Robust Control over a Packet-Based Network  + (Submitted, 2006 American Control Conference)
• Estimation over Communication Networks: Performance Bounds and Achievability Results  + (Submitted, 2006 Conference on Decision and Control)
• Optimization-Based Navigation for the DARPA Grand Challenge  + (Submitted, 2006 Conference on Decision and Control)
• Multi-Hop Relay Protocols for Fast Consensus Seeking  + (Submitted, 2006 Conference on Decision and Control)
• Approximation of Subnetwork Models using Frequency-Domain Data  + (Submitted, 2006 Conference on Decision and Control)
• Towards Robust Control Over a Packet Dropping Network  + (Submitted, 2006 International Symposium on Mathematical Theory of Networks and Systems (MTNS))
• Data Transmission over Networks for Estimation  + (Submitted, 2006 International Symposium on Mathematical Theory of Networks and Systems (MTNS))
• Effective Sensor Scheduling Schemes Employing Feedback in the Communication Loop  + (Submitted, 2007 American Control Conference (ACC))
• Synthesis of Switching Protocols from Temporal Logic Specifications  + (Submitted, 2012 American Control Conference)
• Robust Control of Uncertain Markov Decision Processes with Temporal Logic Specifications  + (Submitted, 2012 American Control Conference (ACC))
• Temporal Logic Control of Switched Affine Systems with an Application in Fuel Balancing  + (Submitted, 2012 American Control Conference (ACC))
• Parametric Delay-margin Maximization of Consensus Network Using Local Control Scheme  + (Submitted, 2012 American Control Conference (ACC))
• Delay-Based Approximations of Biological Systems for Analysis and Design  + (Submitted, 2012 American Control Conference (ACC))
• Decentralised minimal-time dynamic consensus  + (Submitted, 2012 American Control Conference (ACC))
• Bisimulations for Reasoning about Input-to-State Stability Properties of Hybrid Systems  + (Submitted, 2012 Conference on Decision and Control (CDC))
• On Synthesizing Robust Discrete Controllers under Modeling Uncertainty  + (Submitted, 2012 International Conf on Hybrid Systems: Computation and Control (HSCC))
• Learning diffeomorphism models of robotic sensorimotor cascades  + (Submitted, 2012 International Conference on Robotics and Automation)
• Fault detection and isolation from uninterpreted data in robotic sensorimotor cascades  + (Submitted, 2012 International Conference on Robotics and Automation (ICRA))
• Feedback architectures to regulate flux of components in artificial gene networks  + (Submitted, 2013 American Control Conference (ACC))
• Resource Competition as a Source of Non-Minimum Phase Behavior in Transcription-Translation Systems  + (Submitted, 2013 Conference on Decision and Control (CDC))
• Modeling Environmental Disturbances with the Chemical Master Equation  + (Submitted, 2013 Conference on Decision and Control (CDC))
• Temperature Dependence of Biomolecular Circuit Designs  + (Submitted, 2013 Conference on Decison and Control (CDC))
• Dynamic State Estimation in Distributed Aircraft Electric Control Systems via Adaptive Submodularity  + (Submitted, 2013 Conference on Decison and Control (CDC))
• Stability of Discrete Time Systems with Stochastically Delayed Feedback  + (Submitted, 2013 European Control Conference (ECC))
• Robot Navigation in Dense Human Crowds: the Case for Cooperation  + (Submitted, 2013 International Conference on Robotics and Automation)
• Efficient reactive controller synthesis for a fragment of linear temporal logic  + (Submitted, 2013 International Conference on Robotics and Automation (ICRA))
• Motion planning in observations space with learned diffeomorphism models  + (Submitted, 2013 International Conference on Robotics and Automation (ICRA))
• Optimal Control of Nonlinear Systems with Temporal Logic Specifications  + (Submitted, 2013 International Symposium on Robotics Research (ISRR))

• Efficient control synthesis for augmented finite transition systems with an application to switching protocols  + (Submitted, 2014 American Control Conference (ACC))
• Synthesis of Correct-by-construction Control Protocols for Hybrid Systems Using Partial State Information  + (Submitted, 2014 American Control Conference (ACC))
• A Scalable Formulation for Engineering Combination Therapies for Evolutionary Dynamics of Disease  + (Submitted, 2014 American Control Conference (ACC))
• A Compositional Approach to Stochastic Optimal Control with Temporal Logic Specifications  + (Submitted, 2014 American Control Conference (ACC))
• Time-Delayed Feedback Channel Design: Discrete Time H infty Approach  + (Submitted, 2014 American Control Conference (ACC))
• Exact Stability Analysis of Discrete-Time Linear Systems with Stochastic Delays  + (Submitted, 2014 American Control Conference (ACC))

• Hot-swapping robot task goals in reactive formal synthesis  + (Submitted, 2014 Conference on Decision and Control (CDC))
• Strategy-Driven Partitioning into Switching Modes for Piecewise-Affine Systems with Continuous Environments  + (Submitted, 2014 Conference on Decision and Control (CDC))
• Optimization-based Control of Nonlinear Systems with Linear Temporal Logic Specifications  + (Submitted, 2014 International Conference on Robotics and Automation (ICRA))
• Moving bounding boxes and incremental synthesis for dynamic obstacles  + (Submitted, 2014 International Conference on Robotics and Automation (ICRA))
• System identification of phosophorylation based insulator in a cell-free in vitro transcription-translation system  + (Submitted, 2014 Winter q-bio Conference (5 Nov 2013))
• Implementation And Simulation Of Phosphorylation-Based Insulator In Transcription-Translation Platform  + (Submitted, 2014 Winter q-bio Conference (5 Nov 2013))
• Analysis of Delays in Transcriptional Signaling Networks with Time-Varying Temperature-Dependent Rate Coefficients  + (Submitted, 2014 Winter q-bio Conference (5 Nov 2013))
• Variable Elimination for Scalable Receding Horizon Temporal Logic Planning  + (Submitted, 2015 American Control Conference (ACC))
• Multi-dimensional state estimation in adversarial environment  + (Submitted, 2015 Chinese Control Conference (CCC))
• Global Dynamical Structure Reconstruction from Reconstructed Dynamical Structure Subnetworks: Applications to Biochemical Reaction Networks  + (Submitted, 2015 Conference on Decision and Control (CDC))
• Quantitative Performance Bounds in Biomolecular Circuits due to Temperature Uncertainty  + (Submitted, 2015 Conference on Decision and Control (CDC))
• Control System Analysis on Symmetric Cones  + (Submitted, 2015 Conference on Decision and Control (CDC))
• Synthesis of Distributed Longitudinal Control 1 Protocols for a Platoon of Autonomous Vehicles  + (Submitted, 2015 Conference on Decision and Control (CDC))
• Engineering Principles of Synthetic Biochemical Oscillators with Negative Cyclic Feedback  + (Submitted, 2015 Conference on Decision and Control (CDC))
• A Risk-Aware Architecture for Resilient Spacecraft Operations  + (Submitted, 2015 IEEE Aerospace Conference)
• An Iterative Abstraction Algorithm for Reactive Correct-by-Construction Controller Synthesis  + (Submitted, 2015 International Conference on Hybrid Systems: Computation and Control (HSCC))
• Online Horizon Selection in Receding Horizon Temporal Logic Planning  + (Submitted, 2015 International Conference on Hybrid Systems: Computation and Control (HSCC))
• Cross-entropy Temporal Logic Motion Planning  + (Submitted, 2015 International Conference on Hybrid Systems: Computation and Control (HSCC))
• Systematic Design and Implementation of a Novel Synthetic Fold-Change Detector Biocircuit In Vivo  + (Submitted, 2015 Winter q-bio Conference (5 Nov 2014))
• Synthesis from multi-paradigm specifications  + (Submitted, 2015 Workshop on Synthesis (SYNT))
• Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications  + (Submitted, 2016 Conference on Decision and Control (CDC))
• Design Space Exploration of the Violacein Pathway in Escherichia coli Based Cell-Free System  + (Submitted, 2016 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference)
• Design and application of stationary phase combinatorial promoters  + (Submitted, 2016 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference)
• Fast Automatic Verification of Large-Scale Systems with Lookup Tables  + (Submitted, 2017 ACM International Conference on Hybrid Systems: Computation and Control (HSCC))
• Connected Cruise Control Design Using Probabilistic Model Checking  + (Submitted, 2017 American Control Conference (ACC))
• Hiding variables when decomposing specifications into GR(1) contracts  + (Submitted, 2017 Conference on Decision and Control (CDC))
• Population regulation in microbial consortia using dual feedback control  + (Submitted, 2017 Conference on Decision and Control (CDC))
• Synthesis of Correct-by-Construction Behavior Trees  + (Submitted, 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS))
• Engineering pulsatile communication in bacterial consortia  + (Submitted, 2017 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference)
• Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli  + (Submitted, 2017 Synthetic Engineering: Engineering, Evolution and Design (SEED) Conference)
• Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability  + (Submitted, 2019 American Control Conference (ACC))
• A modal interface contract theory for guarded input/output automata with an application in traffic system design  + (Submitted, 2019 American Control Conference (ACC))
• Risk-aware motion planning for automated vehicle among human-driven cars  + (Submitted, 2019 American Control Conference (ACC))
• Robust Estimation Framework with Semantic Measurements  + (Submitted, 2019 American Control Conference (ACC))
• Towards Assume-Guarantee Profiles for Autonomous Vehicles  + (Submitted, 2019 Conference on Decision and Control (CDC))
• Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia  + (Submitted, 2019 European Control Conference)
• Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits  + (Submitted, 2019 European Control Conference (ECC))
• Control of density and composition in an engineered two-member bacterial community  + (Submitted, 2019 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference)
• Limits of probabilistic safety guarantees when considering human uncertainty  + (Submitted, 2021 Conference on Decision and Control (CDC))
• Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture  + (Submitted, 2021 Conference on Decision and Control (CDC))
• Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems  + (Submitted, 2021 NASA Formal Methods (NFM))
• Context-Aided Variable Elimination for Requirement Engineering  + (Submitted, 2023 Formal Methods in Computer-Aided Design (FMCAD))
• Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows  + (Submitted, 2023 International Conference on Robotics and Automation (ICRA))
• Evaluation Metrics for Object Detection for Autonomous Systems  + (Submitted, 2023 International Conference on Robotics and Automation (ICRA))
• Efficient local validation of partially ordered models via Baysian directed sampling  + (Submitted, 2024 American Control Conference (ACC))
• A Model-Free Algorithm for Extremely Resilient Navigation  + (Submitted, 2024 International Conference on Robotics and Automation (ICRA))
• TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering  + (Submitted, 2024 SEED)
• Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system  + (Submitted, <i>ACS Synthetic Biology</i>, September 2013)
• Distributed Receding Horizon Control with Applications to Multi-Vehicle Formation Stabilization  + (Submitted, <i>Automatica</i>)
• State Estimation Over Packet Dropping Networks Using Multiple Description Coding  + (Submitted, <i>Automatica</i>, July 2005)
• On a Stochastic Sensor Selection Algorithm with Applications in Sensor Scheduling and Sensor Coverage  + (Submitted, <i>Automatica</i>, September 2004)
• Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems  + (Submitted, <i>Cell Systems</i> (Nov 2018))
• Cone Invariance and Rendezvous of Multiple Agents  + (Submitted, <i>IEEE T. Automatic Control</i>)
• UAV as a Reliable Wingman: A Flight Demonstration  + (Submitted, <i>IEEE T. Control Systems Technology</i>)
• Optimal LQG Control Across a Packet-Dropping Link  + (Submitted, <i>Systems and Control Letters</i>)
• Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design  + (Submitted, ACM Transactions on Cyber-Physical Systems (TCPS), Aug 2023)
• Negative autoregulation matches production and demand in synthetic transcriptional networks  + (Submitted, ACS Synthetic Biology (4 Oct 2013))
• A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology  + (Submitted, ACS Synthetic Biology, 2024)
• Impact of Chemical Dynamics of Commercial PURE Systems on Malachite Green Aptamer Fluorescence  + (Submitted, ACS Synthetic Biology, 2024)
• Synthesis and Validation of Control Software For A Vehicular Electric Power Distribution Testbed  + (Submitted, AIAA J. Aerospace Information Systems (Aug 2013))
• Synthetic mammalian signaling circuits for robust cell population control  + (Submitted, Cell Systems)
• The Effect of Compositional Context on Synthetic Gene Networks  + (Submitted, Cell Systems (bioRxiv preprint))
• Reactive motion planning with probabilistic safety guarantees  + (Submitted, Conference on Robotic Learning (CoRL))
• A Domain-Specific Language for Reactive Control Protocols for Aircraft Electric Power Systems  + (Submitted, Hybrid Systems: Computation and Control (HSCC) 2013)
• An Aircraft Electric Power Testbed for Validating Automatically Synthesized Reactive Control Protocols  + (Submitted, Hybrid Systems: Computation and Control (HSCC) 2013)
• Pre-orders for Reasoning about Input-to-State Stability Properties of Hybrid Systems  + (Submitted, Hybrid Systems: Computation and Control (HSCC) 2013)
• Nonlinear Control Methods for Planar Carangiform Robot Fish  + (Submitted, IEEE International Conference on Robotics and Automation, May 2001)
• Model Predictive Control for Signal Temporal Logic Specifications  + (Submitted, IEEE T. Automatic Control (2 Jan 2016))
• Specification and Synthesis of Reactive Protocols for Aircraft Electric Power Distribution  + (Submitted, IEEE T. Control of Networked Systems (14 Nov 2013))
• Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications  + (Submitted, IEEE Transactions on Automatic Control, 2023)
• Flow-Based Synthesis of Reactive Tests for Discrete Decision-Making Systems with Temporal Logic Specifications  + (Submitted, IEEE Transactions on Robotics, 2024)
• Inversion Based Trajectory Optimization  + (Submitted, IFAC Symposium on Nonlinear Control Systems Design (NOLCOS))
• Contracts of Reactivity  + (Submitted, Int'l Conf on Formal Modeling and Analysis of Timed Systems (FORMATS) 2019)
• Bootstrapping bilinear models of simple vehicles  + (Submitted, International Journal of Robotics Research (IJRR), Dec 2013)
• Reasoning over Test Specifications using Assume-Guarantee Contracts  + (Submitted, NASA Formal Methods (NFM), 2023)
• Analysis of primitive genetic interactions for the design of a genetic signal differentiator  + (Submitted, OUP Synthetic Biology, May 2019)
• The effects of time-varying temperature on delays in genetic networks  + (Submitted, SIAM J. Applied Dynamical Systems (SIADS))
• Convex Optimal Uncertainty Quantification  + (Submitted, SIAM Journal on Optimization (28 Nov 2013))
• Negative Feedback Facilitates Temperature Robustness in Biomolecular Circuit Dynamics  + (Submitted, Synthetic Biology: Engineering, Evolution and Design (SEED))
• A MATLAB toolbox for modeling genetic circuits in cell-free systems  + (Synthetic Biology, 6(1):ysab007, 2021)
• Optimal LQG control across packet-dropping links  + (Systems and Control Letters, 56(6):439-446)
• Protein degradation in a TX-TL cell-free expression system using ClpXP protease  + (Technical Report, 7 July 2014)
• Flight control in a flapping-wing fruit fly simulator  + (The Neuromorphic Engineer)
• Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations  + (To appear in IFAC Conference on Analysis and Design of Hybrid Systems (ADHS), 2018)
• Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams  + (To appear in Robotics: Science and Systems (RSS), 2018.)
• When are Distributed Algorithms Robust?  + (To appear, 2006 Conference on Decision and Control (CDC))
• On Sensor Coverage by Mobile Sensors  + (To appear, 2006 Conference on Decision and Control (CDC))
• Model-Based Estimation of Off-Highway Road Geometry using Single-Axis LADAR and Inertial Sensing  + (To appear, 2006 International Conference on Robotics and Automation (ICRA))
• Frequency-Weighted Model Reduction with Applications to Structured Models  + (To appear, 2007 American Control Conference (ACC))
• Bioligically Inspired Feedback Design for Drosophila Flight  + (To appear, 2007 American Control Conference (ACC))
• Convex optimal uncertainty quantification: Algorithms and a case study in energy storage placement for power grids  + (To appear, 2013 American Control Conference (ACC))
• Automaton-Guided Controller Synthesis for Nonlinear Systems with Temporal Logic  + (To appear, 2013 International Conference on Intelligent Robots and Systems (IROS))
• Voluntary lane-change policy synthesis with reactive control improvisation  + (To appear, 2018 Conference on Decision and Control (CDC))
• Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts  + (To appear, 2018 Conference on Decision and Control (CDC))
• Role of interaction network topology in controlling microbial population in consortia  + (To appear, 2018 Conference on Decision and Control (CDC))
• End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks  + (To appear, 2019 AAAI Conference on Artificial Intelligence)
• Inverse Abstraction of Neural Networks Using Symbolic Interpolation  + (To appear, 2019 AAAI Conference on Artificial Intelligence)
• Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions  + (To appear, 2020 Conference on Decision and Control (CDC))
• Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications  + (To appear, 2021 Conference on Decision and Control)
• Time-Optimal Navigation in Uncertain Environments with High-Level Specifications  + (To appear, 2021 Conference on Decision and Control (CDC))
• Robust Safe Control Synthesis with Disturbance Observer-Based Control Barrier Functions  + (To appear, 2022 Conference on Decision and Control (CDC))
• Evaluation Metrics of Object Detection for Quantitative System-Level Analysis of Autonomous Systems  + (To appear, 2023 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS))
• Specifying and Analyzing Networked and Layered Control Systems Operating on Multiple Clocks  + (To appear, 2024 Conference on Decision and Control (CDC))
• Synthesis of Reactive Switching Protocols from Temporal Logic Specifications  + (To appear, <i>IEEE T. Automatic Control</i>)
• Development of cell-free transcription-translation systems in three soil Pseudomonads  + (To appear, ACS Synthetic Biology, 2024)
• A Method for Cost-Effective and Rapid Characterization of Genetic Parts  + (To appear, Journal of Visualized Experiments (JoVE))
• Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response  + (To appear, Proceedings of the National Academy of Science (PNAS))
• Discrete State Estimators for Systems on a Lattice  + (To appear<i>, Automatica</i>)
• Bootstrapping bilinear models of robotic sensorimotor cascades  + (Workshop on the Algorithmic Foundations of Robotics (WAFR), 2010 (Submitted))
• Quantification and Minimization of Crosstalk Sensitivity in Networks  + (arXiv, q-bio.MN)
• Networks with the Smallest Average Distance and the Largest Average Clustering  + (arXiv, q-bio.MN)
• Synthesis of Reactive Protocols for Vehicle-to-Vehicle Communication  + (arXiv:1210.2035)
• How to model DNA replication in stochastic models of synthetic genetic circuits (and why)  + (bioRxiv 2021.09.26.461880)
• Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli  + (bioRxiv 614529, 2019 (revised 2020, 2022))
• Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA  + (bioRxiv 858266)
• System-level studies of a cell-free transcription-translation platform for metabolic engineering  + (bioRxiv Technical Report)
• Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking  + (bioRxiv preprint)
• Synthetic logic circuits using RNA aptamer against T7 RNA polymerase  + (bioRxiv, 4 Sep 2014)
• Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation  + (qBio 2019 Conference)
• Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits  + (qBio 2019 Conference)
• Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design  + (qBio Conference 2019)