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List of results
- Leopold Green, 13 Feb 2017 + (21:57:19, 11 February 2017)
- Consensus and Cooperation in Networked Multi-Agent Systems + (15:26:02, 26 February 2017)
- Group Schedule, Winter 2017 + (21:10:01, 27 February 2017)
- Mar 2017 meeting schedule + (18:45:14, 5 March 2017)
- Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli + (05:56:00, 6 March 2017)
- Engineering pulsatile communication in bacterial consortia + (05:59:01, 6 March 2017)
- Enhancing tolerance to unexpected jumps in GR(1) games + (07:22:18, 22 March 2017)
- The Effect of Compositional Context on Synthetic Gene Networks + (07:41:04, 22 March 2017)
- Population regulation in microbial consortia using dual feedback control + (21:40:20, 22 March 2017)
- The role of single occupancy effects on integrase dynamics in a cell-free system + (06:00:40, 28 March 2017)
- AFOSR BRI, DARPA BioCon + (06:07:20, 28 March 2017)
- SRC TerraSwarm, DENSO CPM + (04:33:48, 17 April 2017)
- Hiding variables when decomposing specifications into GR(1) contracts + (04:42:48, 17 April 2017)
- Apr 2017 meeting schedule + (15:25:22, 19 April 2017)
- SURF 2017: Genetically-Programmed Synthetic Cells and Multi-Cellular Machines + (19:55:08, 1 May 2017)
- Group Schedule, Spring 2017 + (17:59:21, 8 May 2017)
- May 2017 meeting schedule + (00:41:57, 15 May 2017)
- Gabor Stepan, 30 May 2017 + (16:19:18, 30 May 2017)
- Learning-Based Abstractions for Nonlinear Constraint Solving + (17:09:48, 23 July 2017)
- Synthesis of Correct-by-Construction Behavior Trees + (17:16:30, 23 July 2017)
- Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology + (14:38:40, 31 July 2017)
- Group Schedule, Summer 2017 + (14:26:05, 28 August 2017)
- System-level studies of a cell-free transcription-translation platform for metabolic engineering + (05:37:33, 4 September 2017)
- A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response + (14:47:53, 4 September 2017)
- File:Duncan bozenna.jpg + (02:53:29, 25 September 2017)
- Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis + (03:10:08, 25 September 2017)
- An In Silico Modeling Toolbox for Rapid Prototyping of Circuits in a Biomolecular “Breadboard” System + (03:13:30, 25 September 2017)
- Bozenna Pasik-Duncan, Sep 2017 + (03:59:20, 27 September 2017)
- File:Karan Kalsi.jpg + (16:28:03, 28 September 2017)
- Karan Kalsi, Oct 2017 + (21:54:58, 3 October 2017)
- UTRC visit, 12 Oct 2017 + (22:13:09, 11 October 2017)
- WASP visit, 16-17 Oct 2017 + (05:26:20, 12 October 2017)
- Mary Dunlop, Oct 2017 + (13:46:54, 20 October 2017)
- Resource Competition as a Source of Non-Minimum Phase Behavior in Transcription-Translation Systems + (14:29:49, 29 October 2017)
- Analysis and design of a synthetic transcriptional network for exact adaptation + (14:30:30, 29 October 2017)
- Quantifying Crosstalk in Biochemical Systems + (14:30:39, 29 October 2017)
- Feedback architectures to regulate flux of components in artificial gene networks + (14:30:48, 29 October 2017)
- File:Jpl-pdf17.png + (21:24:00, 11 November 2017)
- File:Ncs-hierarchical.png + (18:16:05, 12 November 2017)
- Group Schedule, Fall 2017 + (06:34:49, 4 December 2017)
- UG meetings, Fall 2017 + (14:04:08, 5 December 2017)
- SURF 2018: Experimental verification of a semi-autonomous vehicle design based on human intention + (17:26:23, 8 December 2017)
- File:AVP.png + (20:21:24, 8 December 2017)
- File:AVP contracts.png + (20:21:58, 8 December 2017)
- SURF 2018: Resource Usage in TX-TL + (22:00:20, 11 December 2017)
- CS 142, Fall 2017 + (18:12:30, 13 December 2017)
- File:ASS DNAPEN.jpg + (02:01:51, 14 December 2017)
- SURF 2018: Integrase-based genetic circuits + (02:02:59, 14 December 2017)
- SURF 2018: Evolutionary Stability of Genetic Circuits + (21:54:58, 15 December 2017)
- SURF 2017: Synthetic modules for control of bacterial growth + (00:14:25, 16 December 2017)
- SURF 2018: Synthetic modules for regulation of bacterial growth + (00:15:10, 16 December 2017)
- SURF 2018: Test design for temporal logic controllers + (07:06:57, 16 December 2017)
- File:PARADOX.jpg + (22:35:40, 16 December 2017)
- SURF 2018: Modeling the Effect of Intracellular Signaling Mechanisms on Population Dynamic Behaviors in the Context of Paradoxical Signaling + (22:50:16, 16 December 2017)
- SURF 2018: Engineering metabolic cross-feeding relationships for robust microbial consortia + (15:58:04, 18 December 2017)
- SURF 2018: Contract-based Design of Control Systems + (07:00:13, 19 December 2017)
- Synthesizing flight software (FSW) discrete controllers from formal specifications + (06:39:31, 22 December 2017)
- Model-guided Discovery and Optimization of Cell-based Sensors + (06:39:47, 22 December 2017)
- File:Icb-microbial.png + (17:35:39, 1 January 2018)
- SURF 2018 + (19:45:10, 3 January 2018)
- SURF discussions, Jan 2018 + (08:01:32, 24 January 2018)
- EECI 2013: Automata Theory + (01:15:50, 25 January 2018)
- Distributed Mission and Contingency Management for the DARPA Urban Challenge + (06:57:31, 29 January 2018)
- UG meetings, Winter 2018 + (00:09:24, 23 February 2018)
- John McManus, 5 Mar 2018 + (21:37:15, 3 March 2018)
- Group Schedule, Winter 2018 + (05:29:00, 6 March 2018)
- Emzo de los Santos, 12 Mar 2018 + (05:18:10, 8 March 2018)
- Chelsea Hu, Apr 2018 + (19:53:17, 9 April 2018)
- Ben Richards, 20 Apr 2018 + (15:35:58, 17 April 2018)
- Stochastic systems courses + (17:26:50, 2 May 2018)
- Siva Seetharaman, 10 May 2018 + (20:12:52, 9 May 2018)
- CDS 110, Spring 2018 + (23:05:42, 19 May 2018)
- UG meetings, Spring 2018 + (17:33:28, 5 June 2018)
- Control of bacterial population density with population feedback and molecular sequestration + (04:54:08, 19 June 2018)
- Modeling Dynamic Transcriptional Circuits with CRISPRi + (05:04:54, 19 June 2018)
- Single day construction of multi-gene circuits with 3G assembly + (05:10:34, 19 June 2018)
- Long-distance communication in synthetic bacterial consortia through active signal propagation + (05:12:26, 19 June 2018)
- Voluntary lane-change policy synthesis with reactive control improvisation + (05:25:18, 19 June 2018)
- Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts + (05:31:09, 19 June 2018)
- Length and time scales of cell-cell signaling circuits in agar + (13:59:02, 14 July 2018)
- On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3 + (05:46:37, 15 July 2018)
- Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations + (05:56:57, 15 July 2018)
- Wenlong Xu, 14 Aug 2018 + (06:49:43, 12 August 2018)
- File:Murray-14Dec16.jpg + (17:26:57, 8 September 2018)
- Group Schedule, Spring 2018 + (18:16:39, 8 September 2018)
- Group Schedule, Summer 2018 + (20:45:43, 10 September 2018)
- Small comments on papers + (01:19:18, 21 September 2018)
- Daniel Fremont, Sep 2018 + (21:00:11, 21 September 2018)
- Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams + (13:46:29, 26 September 2018)
- Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability + (13:46:45, 26 September 2018)
- A modal interface contract theory for guarded input/output automata with an application in traffic system design + (05:46:14, 8 October 2018)
- Risk-aware motion planning for automated vehicle among human-driven cars + (05:49:28, 8 October 2018)
- File:Buildacell.png + (05:56:49, 8 October 2018)
- Bode Lecture 2016: Future Directions in Control: A Look Backwards and Forwards + (00:16:31, 23 October 2018)
- Group Schedule, Fall 2018 + (07:51:45, 27 November 2018)
- File:Triple int.png + (00:08:58, 28 November 2018)
- File:Double int.png + (00:09:10, 28 November 2018)
- File:N integrator.png + (00:19:45, 28 November 2018)
- SURF 2019: Geometry of Control-Invariant Sets + (03:40:16, 28 November 2018)
- Paul Van den Hof, Dec 2018 + (06:47:11, 7 December 2018)
- File:3-node Message Routing figure.png + (18:33:08, 10 December 2018)
- File:Message Routing Schematic.png + (18:58:14, 10 December 2018)
- SURF 2019: Engineering a synthetic high-bandwidth intercellular communication system through plasmid conjugation + (23:12:23, 10 December 2018)
- UG meetings, Fall 2018 + (01:23:38, 11 December 2018)
- CDS 131, Fall 2018 + (15:28:18, 11 December 2018)
- SURF 2019: Modeling and Analysis on Robust Synthetic Consortia with Localized Functions + (01:15:39, 12 December 2018)
- File:ADH evo stability.png + (03:02:29, 12 December 2018)
- SURF 2019: Evolutionary Stability of Genetic Circuits + (03:18:51, 12 December 2018)
- File:Aicb19-fieldprogrammable.png + (22:27:01, 25 December 2018)
- File:Arl19-cellfree.png + (22:47:08, 25 December 2018)
- File:Arl19-hybrid.png + (22:57:35, 25 December 2018)
- File:Arl19-zebrafish.png + (23:08:35, 25 December 2018)
- SURF 2019 + (05:02:19, 26 December 2018)
- SURF 2019: River Mapping with Autonomous Surface Vehicles for Flood Hazard Monitoring + (05:07:37, 26 December 2018)
- File:Thor-setup.png + (05:08:47, 26 December 2018)
- Robust Estimation Framework with Semantic Measurements + (05:12:36, 27 December 2018)
- End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks + (05:18:35, 27 December 2018)
- Inverse Abstraction of Neural Networks Using Symbolic Interpolation + (05:21:34, 27 December 2018)
- Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits + (05:30:38, 27 December 2018)
- Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia + (05:33:33, 27 December 2018)
- Role of interaction network topology in controlling microbial population in consortia + (05:39:02, 27 December 2018)
- Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems + (05:42:27, 27 December 2018)
- File:Darpa-biocon.png + (05:56:49, 27 December 2018)
- ICB Microbial, ICB Network19 + (05:12:02, 2 January 2019)
- Alex White + (05:17:48, 2 January 2019)
- Andrew Montequin + (05:25:00, 2 January 2019)
- Jonathan Feldstein + (05:27:52, 2 January 2019)
- Lani Kim + (05:44:09, 2 January 2019)
- SURF 2019: Synthetic modules for regulation of bacterial growth + (00:19:52, 15 January 2019)
- Timing molecular motion and production with a synthetic transcriptional clock + (16:05:51, 19 January 2019)
- User:Admin/Papers + (16:11:11, 19 January 2019)
- Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (16:15:08, 19 January 2019)
- Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks + (15:54:27, 26 January 2019)
- Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks + (15:54:42, 26 January 2019)
- Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli + (15:54:55, 26 January 2019)
- Rapid cell-free forward engineering of novel genetic ring oscillators + (15:55:15, 26 January 2019)
- Sara Molinari, 29 Jan 2019 + (00:17:21, 30 January 2019)
- Ather Gattami, Feb 2019 + (18:58:23, 19 February 2019)
- Elahe Aghapour, Feb 2019 + (21:09:03, 19 February 2019)
- Group Schedule, Winter 2019 + (16:42:16, 11 March 2019)
- Temporal Logic Control of Switched Affine Systems with an Application in Fuel Balancing + (20:05:02, 29 March 2019)
- Kristin Rozier, May 2019 + (16:08:15, 17 May 2019)
- File:Nsf19-cellfree.png + (04:22:55, 21 May 2019)
- File:Arl20-elm.png + (04:39:26, 21 May 2019)
- UG meetings, Spring 2019 + (05:59:33, 6 June 2019)
- Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology + (20:14:14, 8 June 2019)
- Layering assume-guarantee contracts for hierarchical system design + (20:15:24, 8 June 2019)
- Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation + (23:47:25, 9 June 2019)
- Proof of concept continuous event logging in living cells + (23:49:07, 9 June 2019)
- Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits + (23:50:50, 9 June 2019)
- Control of density and composition in an engineered two-member bacterial community + (00:03:42, 10 June 2019)
- Design of a genetic layered feedback controller in synthetic biological circuitry + (00:09:38, 10 June 2019)
- Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design + (00:11:27, 10 June 2019)
- File:Assured-autonomy.png + (04:20:45, 10 June 2019)
- File:Afosr-testandeval.png + (04:29:43, 10 June 2019)
- Group Schedule, Spring 2019 + (16:09:38, 10 June 2019)
- Analysis of primitive genetic interactions for the design of a genetic signal differentiator + (00:13:46, 17 June 2019)
- Stanley Bak, 8 July 2019 + (13:50:59, 8 July 2019)
- Towards Assume-Guarantee Profiles for Autonomous Vehicles + (16:22:34, 1 August 2019)
- Synthetic biology future applications and technology needs + (00:41:08, 27 August 2019)
- A stochastic framework for the design of transient and steady state behavior of biochemical reaction networks + (16:32:03, 3 September 2019)
- Group Schedule, Summer 2019 + (18:17:23, 7 September 2019)
- A Brain Circuit Program for Understanding the Sensorimotor Basis of Behavior + (14:58:24, 18 September 2019)
- Dissecting microbiome-gut-brain circuits for microbial modulation of host cognition in response to diet and stress + (15:00:30, 18 September 2019)
- Jake Beal, 1 Oct 2019 + (23:04:48, 30 September 2019)
- Thomas Mohren, 2 Oct 2019 + (18:19:03, 2 October 2019)
- File:Caltech-freeways.jpg + (21:15:38, 3 October 2019)
- File:Caltech-streets.jpg + (21:16:06, 3 October 2019)
- File:Campus-map.png + (21:18:54, 3 October 2019)
- Mike Biercuk, 7 Oct 2019 + (21:02:47, 7 October 2019)
- Sandeep Chichali, 16 Oct 2019 + (01:37:34, 16 October 2019)
- CMS 273, Winter 2019 + (17:40:13, 19 November 2019)
- Group Schedule, Fall 2019 + (03:09:52, 3 December 2019)
- File:Slide.png + (19:14:47, 3 December 2019)
- CS 142, Fall 2019 + (17:01:59, 5 December 2019)
- File:Architecture auton sys.png + (20:16:01, 8 December 2019)
- AFOSR + (20:44:06, 8 December 2019)
- Eric Wolff, 11 Dec 2019 + (21:16:37, 10 December 2019)
- File:Gridworld sys env.png + (23:07:46, 10 December 2019)
- File:SynBioModelingPipeline.jpg + (06:08:36, 11 December 2019)
- SURF 2020: Test and Evaluation for Autonomy + (21:32:51, 15 December 2019)
- SURF 2020: Rules of the Road--a top-down approach for guaranteeing correct behavior for self-driving cars + (21:41:47, 15 December 2019)
- SURF 2020: Social-Aware Robot Navigation + (21:51:09, 15 December 2019)
- File:2020 SURF fig.png + (18:25:09, 16 December 2019)
- File:SURF 2020 wahl murray.png + (18:27:16, 16 December 2019)
- File:CYHSURF2020.png + (05:25:41, 17 December 2019)
- SURF 2020: System identification of bacterial gene expression as a function of population dynamics + (05:26:00, 17 December 2019)
- CDS 131, Fall 2019 + (07:20:48, 18 December 2019)
- SURF 2020: Applications of synthetic differentiation + (22:07:38, 22 December 2019)
- SURF 2020: Hardware Implementation of Contract-Based Design for Automated Valet Parking System + (18:08:56, 30 December 2019)
- SURF 2020 + (22:22:53, 12 January 2020)
- SURF discussions, Jan 2019 + (19:01:26, 20 January 2020)
- SURF GOTChA chart + (00:04:55, 22 January 2020)
- SURF 2020: Genetically-Programmed Synthetic Cells and Multi-Cellular Machines + (15:24:48, 23 January 2020)
- SURF discussions, Jan 2020 + (22:26:05, 23 January 2020)
- Liren Yang, 5-6 Feb 2020 + (04:48:02, 6 February 2020)
- Sarah Dean, 11-12 Feb 2020 + (00:06:55, 11 February 2020)
- David Garcia, 13 Feb 2020 + (19:43:53, 13 February 2020)
- UG meetings, Dec 2019 + (15:15:28, 22 February 2020)
- EECI 2020: Discrete Abstractions + (17:02:20, 29 February 2020)
- EECI 2020: Rulebooks + (17:31:11, 29 February 2020)
- EECI 2020: Course Introduction + (21:56:28, 1 March 2020)
- EECI 2020: Automata Theory + (22:10:56, 1 March 2020)
- EECI 2020: Temporal Logic + (22:19:30, 1 March 2020)
- EECI 2020: Reactive Synthesis + (22:38:25, 1 March 2020)
- EECI 2020: Model Checking + (07:56:30, 10 March 2020)
- EECI 2020: Probabilistic Systems + (07:57:46, 10 March 2020)
- EECI 2020: Computer Session: Stormpy + (08:00:30, 10 March 2020)
- Group Schedule, Winter 2020 + (05:55:16, 12 March 2020)
- EECI 2020: Minimum Violation Planning + (05:12:55, 13 March 2020)
- EECI 2020: Behavior Specifications + (07:26:33, 13 March 2020)
- EECI 2020: Computer Session: MVP + (07:36:24, 13 March 2020)
- EECI 2020: Safety-Critical Systems + (07:37:58, 13 March 2020)
- EECI 2020: Course Summary + (07:39:19, 13 March 2020)
- EECI 2020: Computer Session: TuLiP + (18:50:57, 18 March 2020)
- File:W1 setup-31Mar2020.pdf + (16:32:57, 2 April 2020)
- EECI-IGSC 2020 + (13:15:47, 8 April 2020)
- E/SEC 103, Spring 2020 + (23:18:45, 19 April 2020)
- Risk-Averse Planning Under Uncertainty + (05:57:43, 26 May 2020)
- Networked Feedback Systems in Biology + (21:23:07, 26 May 2020)
- Characterization of Insect Flight Control Systems + (21:23:20, 26 May 2020)
- Biomolecular Feedback Circuits for Modular, Robust and Rapid Response + (21:23:33, 26 May 2020)
- BE 240, Spring 2020 + (14:50:01, 28 May 2020)
- Group Schedule, Spring 2020 + (14:09:59, 8 June 2020)
- SBtools Bootcamp, June 2020 + (02:44:01, 14 June 2020)
- File:RSI-soil syn bio.png + (05:03:38, 20 July 2020)
- File:Rosen20-simplecell.png + (23:53:15, 8 August 2020)
- Genetic Circuits for Multi-Cellular Machines + (23:56:21, 8 August 2020)
- File:Cellsys-actuation.png + (00:10:03, 9 August 2020)
- Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions + (17:56:46, 10 August 2020)
- Synthetic Cell, Summer 2020 + (15:36:42, 26 August 2020)
- Group Schedule, Summer 2020 + (17:17:12, 20 September 2020)
- GOTChA Chart + (15:43:30, 25 September 2020)
- CMS 273, Winter 2020 + (16:24:48, 15 November 2020)
- BE 107, Spring 2019 + (21:58:39, 23 November 2020)
- File:Heilmeier-isat.png + (17:34:20, 25 November 2020)
- Heilmeier Catechism + (17:37:18, 25 November 2020)
- Modeling and control of the effects of bilateral asymmetries in insect flight + (15:43:28, 3 December 2020)
- CDS 131, Fall 2020 + (00:16:44, 7 December 2020)
- Group Schedule, Fall 2020 + (15:56:39, 7 December 2020)
- SURF 2021: Modeling tools for design and analysis of synthetic biological circuits + (04:19:26, 22 December 2020)
- CMS 273, Winter 2021 + (05:56:42, 26 December 2020)
- File:Experiment prop.png + (12:25:29, 4 January 2021)
- SURF 2021: Test Design for Extremely Resilient System + (12:33:22, 4 January 2021)
- File:ATPase Protoflagellum.png + (08:32:54, 6 January 2021)
- SURF 2021 + (16:58:09, 6 January 2021)
- SURF 2021: Optimizing cell extract for a proto-flagellar system + (17:00:05, 6 January 2021)
- File:Synthetic-cell.png + (17:54:58, 7 January 2021)
- SURF 2021: Genetically-Programmed Synthetic Cells and Multi-Cellular Machines + (17:56:17, 7 January 2021)
- SURF discussions, Feb 2021 + (20:06:12, 28 January 2021)