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List of results
- A stochastic framework for the design of transient and steady state behavior of biochemical reaction networks + (2015d)
- Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions + (2015e)
- Application of Correct-by-Construction Principles for a Resilient Risk-Aware Architecture + (2015f)
- The effects of time-varying temperature on delays in genetic networks + (2015g)
- Symbolic construction of GR(1) contracts for systems with full information + (2015h)
- Linear System Identifiability from Distributional and Time Series Data + (2015h)
- Rapid cell-free forward engineering of novel genetic ring oscillators + (2015i)
- Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively + (2015j)
- Rapid in vitro engineering of 16 two-input logic gates + (2015j)
- Use of population-level cell-state switching for recording transient inducer pulses + (2015j)
- Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications + (2015k)
- An analytical approach to bistable biological circuit discrimination using real algebraic geometry + (2015l)
- Interfacing TuLiP with the JPL Statechart Autocoder: Initial progress toward synthesis of flight software from formal specifications + (2015m)
- Model Predictive Control for an Uncertain Smart Thermal Grid + (2015n)
- Model Predictive Control for Signal Temporal Logic Specifications + (2016a)
- Design Space Exploration of the Violacein Pathway in Escherichia coli Based Cell-Free System + (2016b)
- Design and application of stationary phase combinatorial promoters + (2016b)
- The role of single occupancy effects on integrase dynamics in a cell-free system + (2016b)
- Stochastic Gene Expression in Single Gene Oscillator Variants + (2016b)
- Synthesis of Control Protocols for Switched Electrical Power Systems for Commercial Applications with Safety Specifications + (2016c)
- A population-based temporal logic gate for timing and recording chemical events + (2016d)
- Control design for hybrid systems with TuLiP: The temporal logic planning toolbox + (2016e)
- Connected Cruise Control Design Using Probabilistic Model Checking + (2016f)
- Enhancing tolerance to unexpected jumps in GR(1) games + (2016g)
- Fast Automatic Verification of Large-Scale Systems with Lookup Tables + (2016h)
- The Effect of Compositional Context on Synthetic Gene Networks + (2016i)
- Quantifying Resource Competition and its Effects in the TX-TL System + (2016k)
- A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response + (2016l)
- Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (2016x)
- Engineering pulsatile communication in bacterial consortia + (2017a)
- Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli + (2017a)
- Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology + (2017a)
- Population regulation in microbial consortia using dual feedback control + (2017b)
- Hiding variables when decomposing specifications into GR(1) contracts + (2017b)
- Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis + (2017b)
- Learning-Based Abstractions for Nonlinear Constraint Solving + (2017c)
- Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States + (2017d)
- Synthesis of Correct-by-Construction Behavior Trees + (2017e)
- Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks + (2017e)
- Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks + (2017f)
- Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli + (2017g)
- Layering assume-guarantee contracts for hierarchical system design + (2017h)
- System-level studies of a cell-free transcription-translation platform for metabolic engineering + (2017i)
- Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology + (2017j)
- Modeling Dynamic Transcriptional Circuits with CRISPRi + (2017k)
- Length and time scales of cell-cell signaling circuits in agar + (2017k)
- Control of bacterial population density with population feedback and molecular sequestration + (2017k)
- Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams + (2017l)
- Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations + (2017m)
- Long-distance communication in synthetic bacterial consortia through active signal propagation + (2018a)
- Single day construction of multi-gene circuits with 3G assembly + (2018a)
- Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts + (2018b)
- Role of interaction network topology in controlling microbial population in consortia + (2018b)
- Voluntary lane-change policy synthesis with reactive control improvisation + (2018b)
- On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3 + (2018c)
- Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability + (2018d)
- A modal interface contract theory for guarded input/output automata with an application in traffic system design + (2018d)
- Risk-aware motion planning for automated vehicle among human-driven cars + (2018d)
- Robust Estimation Framework with Semantic Measurements + (2018d)
- End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks + (2018e)
- Inverse Abstraction of Neural Networks Using Symbolic Interpolation + (2018e)
- Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits + (2018f)
- Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia + (2018f)
- Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems + (2018g)
- Design Guidelines For Sequestration Feedback Networks + (2018g)
- Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape + (2019a)
- Proof of concept continuous event logging in living cells + (2019b)
- Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli + (2019b)
- Control of density and composition in an engineered two-member bacterial community + (2019b)
- Design of a genetic layered feedback controller in synthetic biological circuitry + (2019b)
- Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation + (2019c)
- Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits + (2019c)
- Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design + (2019c)
- Towards Assume-Guarantee Profiles for Autonomous Vehicles + (2019d)
- A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression + (2019e)
- An automated model reduction tool to guide the design and analysis of synthetic biological circuits + (2019f)
- Contracts of Reactivity + (2019g)
- Analysis of primitive genetic interactions for the design of a genetic signal differentiator + (2019g)
- Counter-example Guided Learning of Bounds on Environment Behavior + (2019h)
- Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits + (2019i)
- Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli + (2019i)
- A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology + (2019i)
- Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations + (2019i)
- Intermittent Connectivity for Exploration in Communication-Constrained Multi-Agent Systems + (2019k)
- Invariant Sets for Integrators and Quadrotor Obstacle Avoidance + (2019l)
- Risk-Averse Planning Under Uncertainty + (2019l)
- Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions + (2020a)
- Theory-Based Engineering of Biomolecular Circuits in Living Cells + (AFOSR BRI)
- Formal Methods for V&V and T&E of Autonomous Systems + (AFOSR T&E)
- Field-Programmable, Recombinase-Based Biomolecular Circuits + (AICB MRSB)
- Engineering Durable Cell-Free Biological Capabilities for Advanced Sensing and Prototyping + (ARL cellfree)
- Enabling Technologies for Cell-Silicon Interfacing + (ARL19 hybrid)
- Fundamental Biological Factors Underlying Human Performance: From Molecular Diagnostics and Detection to Behavior and Systems Biology + (ARL19 zebrafish)
- Dissecting microbiome-gut-brain circuits for microbial modulation of host cognition in response to diet and stress + (ARO GMB)
- Biomolecular Circuits for Rapid Detection and Response to Environmental Events + (ARO ICB)
- Cell-Free Expression of Membrane Proteins with Applications to Drug Discovery + (Amgen TX-TL)
- Correct-by-Construction Synthesis of Control Protocols for Aerospace Systems + (Boeing)
- Improvement of E. coli transcription-translation (TX-TL) system + (Caltech Grubstake)
- Assurance for Learning Enabled Systems + (DARPA ALES)
- Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors + (DARPA BioCon)
- Temporal Logic Specifications for Control System Design in Automotive Systems + (DENSO CPM)
- Programmable Molecular Technology Initiative + (GBMF PMTI)
- Establishing microfluidic cell-free systems for the rapid prototyping of synthetic genetic networks + (HFSP TX-TL)
