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List of results

• The Effect of Compositional Context on Synthetic Gene Networks  + (2016i)
• Quantifying Resource Competition and its Effects in the TX-TL System  + (2016k)
• A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response  + (2016l)
• Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (2016x)
• Engineering pulsatile communication in bacterial consortia  + (2017a)
• Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli  + (2017a)
• Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology  + (2017a)
• Population regulation in microbial consortia using dual feedback control  + (2017b)
• Hiding variables when decomposing specifications into GR(1) contracts  + (2017b)
• Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis  + (2017b)
• Learning-Based Abstractions for Nonlinear Constraint Solving  + (2017c)
• Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States  + (2017d)
• Synthesis of Correct-by-Construction Behavior Trees  + (2017e)
• Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks  + (2017e)
• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  + (2017f)
• Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli  + (2017g)
• Layering assume-guarantee contracts for hierarchical system design  + (2017h)
• System-level studies of a cell-free transcription-translation platform for metabolic engineering  + (2017i)
• Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology  + (2017j)
• Modeling Dynamic Transcriptional Circuits with CRISPRi  + (2017k)
• Length and time scales of cell-cell signaling circuits in agar  + (2017k)
• Control of bacterial population density with population feedback and molecular sequestration  + (2017k)
• Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams  + (2017l)
• Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations  + (2017m)
• Long-distance communication in synthetic bacterial consortia through active signal propagation  + (2018a)
• Single day construction of multi-gene circuits with 3G assembly  + (2018a)

• Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts  + (2018b)
• Role of interaction network topology in controlling microbial population in consortia  + (2018b)
• Voluntary lane-change policy synthesis with reactive control improvisation  + (2018b)

• On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3  + (2018c)
• Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability  + (2018d)
• A modal interface contract theory for guarded input/output automata with an application in traffic system design  + (2018d)
• Risk-aware motion planning for automated vehicle among human-driven cars  + (2018d)
• Robust Estimation Framework with Semantic Measurements  + (2018d)
• End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks  + (2018e)
• Inverse Abstraction of Neural Networks Using Symbolic Interpolation  + (2018e)
• Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits  + (2018f)
• Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia  + (2018f)
• Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems  + (2018g)
• Design Guidelines For Sequestration Feedback Networks  + (2018g)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (2019a)
• Proof of concept continuous event logging in living cells  + (2019b)
• Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli  + (2019b)
• Control of density and composition in an engineered two-member bacterial community  + (2019b)
• Design of a genetic layered feedback controller in synthetic biological circuitry  + (2019b)
• Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation  + (2019c)
• Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits  + (2019c)
• Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design  + (2019c)
• Towards Assume-Guarantee Profiles for Autonomous Vehicles  + (2019d)
• A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression  + (2019e)
• An automated model reduction tool to guide the design and analysis of synthetic biological circuits  + (2019f)
• Contracts of Reactivity  + (2019g)
• Analysis of primitive genetic interactions for the design of a genetic signal differentiator  + (2019g)