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List of results

• Optimal Control with Weighted Average Costs and Temporal Logic Specifications  + (2012i)
• Synthesis of Reactive Switching Protocols from Temporal Logic Specifications  + (2012j)
• Robot Navigation in Dense Human Crowds: the Case for Cooperation  + (2012k)
• Motion planning in observations space with learned diffeomorphism models  + (2012l)
• Patching task-level robot controllers based on a local μ-calculus formula  + (2012m)
• Efficient reactive controller synthesis for a fragment of linear temporal logic  + (2012n)
• Just-in-time synthesis for motion planning with temporal logic  + (2012o)
• Biomolecular resource utilization in elementary cell-free gene circuits  + (2012p)
• Design and Implementation of a Biomolecular Circuit for Tracking Protein Concentration  + (2012q)
• Convex optimal uncertainty quantification: Algorithms and a case study in energy storage placement for power grids  + (2012r)
• Computing Augmented Finite Transition Systems to Synthesize Switching Protocols for Polynomial Switched Systems  + (2012s)
• Feedback architectures to regulate flux of components in artificial gene networks  + (2012t)
• Pre-orders for Reasoning about Input-to-State Stability Properties of Hybrid Systems  + (2012u)
• An Aircraft Electric Power Testbed for Validating Automatically Synthesized Reactive Control Protocols  + (2012v)
• A Domain-Specific Language for Reactive Control Protocols for Aircraft Electric Power Systems  + (2012w)
• Stability of Discrete Time Systems with Stochastically Delayed Feedback  + (2012x)
• Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response  + (2012y)
• Synthesis of Control Protocols for Autonomous Systems  + (2012z)
• Synthesis of Reactive Protocols for Vehicle-to-Vehicle Communication  + (2012z)
• Optimal Control of Non-deterministic Systems for a Computationally Efficient Fragment of Temporal Logic  + (2013b)
• Temperature Dependence of Biomolecular Circuit Designs  + (2013b)
• Dynamic State Estimation in Distributed Aircraft Electric Control Systems via Adaptive Submodularity  + (2013b)
• Reverse Engineering Combination Therapies for Evolutionary Dynamics of Disease: An Hinfty Approach  + (2013b)
• An In Silico Modeling Toolbox for Rapid Prototyping of Circuits in a Biomolecular “Breadboard” System  + (2013b)
• Resource Competition as a Source of Non-Minimum Phase Behavior in Transcription-Translation Systems  + (2013b)
• Modeling Environmental Disturbances with the Chemical Master Equation  + (2013b)
• Automaton-Guided Controller Synthesis for Nonlinear Systems with Temporal Logic  + (2013c)
• Optimal Control of Nonlinear Systems with Temporal Logic Specifications  + (2013d)
• A robust model predictive control algorithm augmented with a reactive safety mode  + (2013e)
• Synthesis and Validation of Control Software For A Vehicular Electric Power Distribution Testbed  + (2013f)
• Optimization-based Control of Nonlinear Systems with Linear Temporal Logic Specifications  + (2013g)
• Moving bounding boxes and incremental synthesis for dynamic obstacles  + (2013g)
• Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system  + (2013h)
• Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology  + (2013i)
• Efficient control synthesis for augmented finite transition systems with an application to switching protocols  + (2013j)
• Collaborative System Identification via Parameter Consensus  + (2013j)
• Synthesis of Correct-by-construction Control Protocols for Hybrid Systems Using Partial State Information  + (2013j)
• A Scalable Formulation for Engineering Combination Therapies for Evolutionary Dynamics of Disease  + (2013j)
• A Compositional Approach to Stochastic Optimal Control with Temporal Logic Specifications  + (2013j)
• Time-Delayed Feedback Channel Design: Discrete Time H infty Approach  + (2013j)
• Exact Stability Analysis of Discrete-Time Linear Systems with Stochastic Delays  + (2013j)
• Negative autoregulation matches production and demand in synthetic transcriptional networks  + (2013k)
• System identification of phosophorylation based insulator in a cell-free in vitro transcription-translation system  + (2013l)
• Implementation And Simulation Of Phosphorylation-Based Insulator In Transcription-Translation Platform  + (2013l)
• Analysis of Delays in Transcriptional Signaling Networks with Time-Varying Temperature-Dependent Rate Coefficients  + (2013l)
• Specification and Synthesis of Reactive Protocols for Aircraft Electric Power Distribution  + (2013m)
• Design and implementation of a synthetic biomolecular concentration tracker  + (2013n)
• Resource usage and gene circuit performance characterization in a cell-free ‘breadboard’  + (2013o)
• Convex Optimal Uncertainty Quantification  + (2013p)
• Bootstrapping bilinear models of simple vehicles  + (2013q)

• Pre-orders for Reasoning about Stability Properties with respect to Input of Hybrid Systems  + (2013r)

• Population diversification in a yeast metabolic program promotes anticipation of environmental shifts  + (2014a)
• A Contract-Based Methodology for Aircraft Electric Power System Design  + (2014b)
• Negative Feedback Facilitates Temperature Robustness in Biomolecular Circuit Dynamics  + (2014c)
• Modeling the Effects of Compositional Context on Promoter Activity in an E. Coli Extract based Transcription-Translation System  + (2014d)
• Designing Robustness to Temperature in a Feedforward Loop Circuit  + (2014d)
• Model Predictive Control with Signal Temporal Logic Specifications  + (2014d)
• Privacy Preserving Average Consensus  + (2014d)
• Hot-swapping robot task goals in reactive formal synthesis  + (2014d)
• Synthesizing Combination Therapies for Evolutionary Dynamics of Disease for Nonlinear Pharmacodynamics  + (2014d)
• Strategy-Driven Partitioning into Switching Modes for Piecewise-Affine Systems with Continuous Environments  + (2014d)
• Synthetic circuit for exact adaptation and fold-change detection  + (2014e)
• A Compositional Approach to Stochastic Optimal Control with Co-safe Temporal Logic Specifications  + (2014f)
• Engineering Transcriptional Regulator Effector Specificity Through Rational Design and Rapid Prototyping  + (2014g)
• Protein degradation in a TX-TL cell-free expression system using ClpXP protease  + (2014g)
• Synthetic logic circuits using RNA aptamer against T7 RNA polymerase  + (2014h)
• Variable Elimination for Scalable Receding Horizon Temporal Logic Planning  + (2014i)
• An Iterative Abstraction Algorithm for Reactive Correct-by-Construction Controller Synthesis  + (2014j)
• Online Horizon Selection in Receding Horizon Temporal Logic Planning  + (2014j)
• Reactive Synthesis from Signal Temporal Logic Specifications  + (2014j)
• Cross-entropy Temporal Logic Motion Planning  + (2014j)
• A State-space Realization Approach to Set Identification of Biochemical Kinetic Parameters  + (2014k)
• A Risk-Aware Architecture for Resilient Spacecraft Operations  + (2014l)
• Characterization of minimum inducer separation time for a two-input integrase-based event detector  + (2014m)
• Systematic Design and Implementation of a Novel Synthetic Fold-Change Detector Biocircuit In Vivo  + (2014m)
• Robust Model Predictive Control for Signal Temporal Logic Synthesis  + (2014n)
• Multi-dimensional state estimation in adversarial environment  + (2015a)
• Rapid prototyping of biomolecular circuits through module characterization in cell-free expression systems  + (2015a)
• Prototyping 1,4-butanediol (BDO) biosynthesis pathway in a cell-free transcription-translation (TX-TL) system  + (2015b)
• Design of a Toolbox of RNA Thermometers  + (2015b)
• Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (2015b)
• Synthesis from multi-paradigm specifications  + (2015c)
• Global Dynamical Structure Reconstruction from Reconstructed Dynamical Structure Subnetworks: Applications to Biochemical Reaction Networks  + (2015d)
• Quantitative Performance Bounds in Biomolecular Circuits due to Temperature Uncertainty  + (2015d)
• Control System Analysis on Symmetric Cones  + (2015d)
• Synthesis of Distributed Longitudinal Control 1 Protocols for a Platoon of Autonomous Vehicles  + (2015d)
• Engineering Principles of Synthetic Biochemical Oscillators with Negative Cyclic Feedback  + (2015d)
• A stochastic framework for the design of transient and steady state behavior of biochemical reaction networks  + (2015d)
• Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions  + (2015e)
• Application of Correct-by-Construction Principles for a Resilient Risk-Aware Architecture  + (2015f)
• The effects of time-varying temperature on delays in genetic networks  + (2015g)
• Symbolic construction of GR(1) contracts for systems with full information  + (2015h)
• Linear System Identifiability from Distributional and Time Series Data  + (2015h)
• Rapid cell-free forward engineering of novel genetic ring oscillators  + (2015i)
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (2015j)
• Rapid in vitro engineering of 16 two-input logic gates  + (2015j)
• Use of population-level cell-state switching for recording transient inducer pulses  + (2015j)
• Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications  + (2015k)
• An analytical approach to bistable biological circuit discrimination using real algebraic geometry  + (2015l)
• Interfacing TuLiP with the JPL Statechart Autocoder: Initial progress toward synthesis of flight software from formal specifications  + (2015m)
• Model Predictive Control for an Uncertain Smart Thermal Grid  + (2015n)