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List of results
- Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation + (Conference paper)
- Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits + (Conference paper)
- Control of density and composition in an engineered two-member bacterial community + (Conference paper)
- An automated model reduction tool to guide the design and analysis of synthetic biological circuits + (Conference paper)
- Design of a genetic layered feedback controller in synthetic biological circuitry + (Conference paper)
- Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design + (Conference paper)
- Contracts of Reactivity + (Conference paper)
- Counter-example Guided Learning of Bounds on Environment Behavior + (Conference paper)
- Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits + (Conference paper)
- Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli + (Conference paper)
- A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology + (Conference paper)
- Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations + (Conference paper)
- Intermittent Connectivity for Exploration in Communication-Constrained Multi-Agent Systems + (Conference paper)
- Invariant Sets for Integrators and Quadrotor Obstacle Avoidance + (Conference paper)
- Risk-Averse Planning Under Uncertainty + (Conference paper)
- Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions + (Conference paper)
- A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression + (Conference paper)
- Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture + (Conference paper)
- Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications + (Conference paper)
- Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems + (Conference paper)
- Planning and Optimization for Multi-Robot Planetary Cave Exploration under Intermittent Connectivity Constraints + (Conference paper)
- Learning pose estimation for UAV autonomous navigation and landing using visual-inertial sensor data + (Conference paper)
- Reactive motion planning with probabilistic safety guarantees + (Conference paper)
- Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions + (Conference paper)
- Time-Optimal Navigation in Uncertain Environments with High-Level Specifications + (Conference paper)
- Limits of probabilistic safety guarantees when considering human uncertainty + (Conference paper)
- Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations + (Conference paper)
- Constrained risk-averse Markov decision processes + (Conference paper)
- Systems Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain Axis + (Conference paper)
- Risk-Averse Decision Making Under Uncertainty + (Conference paper)
- Robustness Guarantees for Structured Model Reduction of Dynamical Systems + (Conference paper)
- The Python Control Systems Library (python-control) + (Conference paper)
- Towards Better Test Coverage: Merging Unit Tests for Autonomous Systems + (Conference paper)
- From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology + (Conference paper)
- Robust Safe Control Synthesis with Disturbance Observer-Based Control Barrier Functions + (Conference paper)
- Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows + (Conference paper)
- Evaluation Metrics for Object Detection for Autonomous Systems + (Conference paper)
- Minimally Constrained Testing for Autonomy with Temporal Logic Specifications + (Conference paper)
- Reasoning over Test Specifications using Assume-Guarantee Contracts + (Conference paper)
- Evaluation Metrics of Object Detection for Quantitative System-Level Analysis of Autonomous Systems + (Conference paper)
- A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths + (Conference paper)
- Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency + (Conference paper)
- Specifying and Analyzing Networked and Layered Control Systems Operating on Multiple Clocks + (Conference paper)
- Towards Assume-Guarantee Profiles for Autonomous Vehicles + (Conference paper (submitted))
- A Robust Nonlinear Model Predictive Control Algorithm with a Safety Mode + (Conference paperp)
- TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering + (Conference poster)
- Context-Aided Variable Elimination for Requirement Engineering + (Conference submission)
- A Model-Free Algorithm for Extremely Resilient Navigation + (Conference submission)
- Efficient local validation of partially ordered models via Baysian directed sampling + (Conference submission)
- Nonholonomic control systems: from steering to stabilization with sinuoids + (Conference version)
- Equilibrium Controllability for a Class of Mechanical Systems + (Conferencepaper)
- Control on the Sphere and Reduced Attitude Stabilization + (Converence paper)
- Rapid in vitro engineering of 16 two-input logic gates + (Downloading and printing FAQ)
- A Motion Planner for Nonholonomic Robots + (Downloading and printing FAQ)
- Trajectory generation for the N-trailer problem using Goursat normal form + (ERL memo)
- Future Directions in Control, Dynamics, and Systems: Overview, Grand Challenges, and New Courses + (Journal submission)
- Effective Transition Rates for Epitaxial Growth Using Fast Modulation + (Journal submission)
- Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems + (Journal submission)
- Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response + (Journal Paper)
- Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system + (Journal Submission)
- Synthesis and Validation of Control Software For A Vehicular Electric Power Distribution Testbed + (Journal Submission)
- UAV as a Reliable Wingman: A Flight Demonstration + (Journal Submission)
- Optimal LQG Control Across a Packet-Dropping Link + (Journal Submission)
- Design and implementation of a synthetic biomolecular concentration tracker + (Journal article)
- Rapid cell-free forward engineering of novel genetic ring oscillators + (Journal paper)
- Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions + (Journal paper)
- Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (Journal paper)
- Synthetic circuit for exact adaptation and fold-change detection + (Journal paper)
- A Contract-Based Methodology for Aircraft Electric Power System Design + (Journal paper)
- Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology + (Journal paper)
- A robust model predictive control algorithm augmented with a reactive safety mode + (Journal paper)
- Synthesis of Reactive Switching Protocols from Temporal Logic Specifications + (Journal paper)
- Timing molecular motion and production with a synthetic transcriptional clock + (Journal paper)
- Discrete State Estimators for Systems on a Lattice + (Journal paper)
- Modelling Efficient Pisciform Swimming for Control + (Journal paper)
- An analytical approach to bistable biological circuit discrimination using real algebraic geometry + (Journal paper)
- A population-based temporal logic gate for timing and recording chemical events + (Journal paper)
- Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks + (Journal paper)
- Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks + (Journal paper)
- Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli + (Journal paper)
- Layering assume-guarantee contracts for hierarchical system design + (Journal paper)
- Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology + (Journal paper)
- On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3 + (Journal paper)
- Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (Journal paper)
- Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop + (Journal paper)
- A MATLAB toolbox for modeling genetic circuits in cell-free systems + (Journal paper)
- Guidelines for Designing the Antithetic Feedback Motif + (Journal paper)
- Data-driven network models for genetic circuits from time-series data with incomplete measurements + (Journal paper)
- Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models + (Journal paper)
- Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks + (Journal paper)
- Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates + (Journal paper)
- BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts + (Journal paper)
- Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications + (Journal paper)
- Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape + (Journal paper)
- Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles + (Journal paper)
- Control education for societal-scale challenges: A community roadmap + (Journal paper)
- Development of cell-free transcription-translation systems in three soil Pseudomonads + (Journal paper)
- Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation + (Journal paper)
- Addressable and adaptable intercellular communication via DNA messaging + (Journal paper)
- Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli + (Journal paper)