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List of results

• Control of density and composition in an engineered two-member bacterial community  + (Submitted, 2019 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference)
• Limits of probabilistic safety guarantees when considering human uncertainty  + (Submitted, 2021 Conference on Decision and Control (CDC))
• Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture  + (Submitted, 2021 Conference on Decision and Control (CDC))
• Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems  + (Submitted, 2021 NASA Formal Methods (NFM))
• Context-Aided Variable Elimination for Requirement Engineering  + (Submitted, 2023 Formal Methods in Computer-Aided Design (FMCAD))
• Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows  + (Submitted, 2023 International Conference on Robotics and Automation (ICRA))
• Evaluation Metrics for Object Detection for Autonomous Systems  + (Submitted, 2023 International Conference on Robotics and Automation (ICRA))
• Efficient local validation of partially ordered models via Baysian directed sampling  + (Submitted, 2024 American Control Conference (ACC))
• A Model-Free Algorithm for Extremely Resilient Navigation  + (Submitted, 2024 International Conference on Robotics and Automation (ICRA))
• TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering  + (Submitted, 2024 SEED)
• Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system  + (Submitted, <i>ACS Synthetic Biology</i>, September 2013)
• Distributed Receding Horizon Control with Applications to Multi-Vehicle Formation Stabilization  + (Submitted, <i>Automatica</i>)
• State Estimation Over Packet Dropping Networks Using Multiple Description Coding  + (Submitted, <i>Automatica</i>, July 2005)
• On a Stochastic Sensor Selection Algorithm with Applications in Sensor Scheduling and Sensor Coverage  + (Submitted, <i>Automatica</i>, September 2004)
• Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems  + (Submitted, <i>Cell Systems</i> (Nov 2018))
• Cone Invariance and Rendezvous of Multiple Agents  + (Submitted, <i>IEEE T. Automatic Control</i>)
• UAV as a Reliable Wingman: A Flight Demonstration  + (Submitted, <i>IEEE T. Control Systems Technology</i>)
• Optimal LQG Control Across a Packet-Dropping Link  + (Submitted, <i>Systems and Control Letters</i>)
• Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design  + (Submitted, ACM Transactions on Cyber-Physical Systems (TCPS), Aug 2023)
• Negative autoregulation matches production and demand in synthetic transcriptional networks  + (Submitted, ACS Synthetic Biology (4 Oct 2013))
• A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology  + (Submitted, ACS Synthetic Biology, 2024)
• Impact of Chemical Dynamics of Commercial PURE Systems on Malachite Green Aptamer Fluorescence  + (Submitted, ACS Synthetic Biology, 2024)
• Synthesis and Validation of Control Software For A Vehicular Electric Power Distribution Testbed  + (Submitted, AIAA J. Aerospace Information Systems (Aug 2013))
• Synthetic mammalian signaling circuits for robust cell population control  + (Submitted, Cell Systems)
• The Effect of Compositional Context on Synthetic Gene Networks  + (Submitted, Cell Systems (bioRxiv preprint))
• Reactive motion planning with probabilistic safety guarantees  + (Submitted, Conference on Robotic Learning (CoRL))
• A Domain-Specific Language for Reactive Control Protocols for Aircraft Electric Power Systems  + (Submitted, Hybrid Systems: Computation and Control (HSCC) 2013)
• An Aircraft Electric Power Testbed for Validating Automatically Synthesized Reactive Control Protocols  + (Submitted, Hybrid Systems: Computation and Control (HSCC) 2013)
• Pre-orders for Reasoning about Input-to-State Stability Properties of Hybrid Systems  + (Submitted, Hybrid Systems: Computation and Control (HSCC) 2013)
• Nonlinear Control Methods for Planar Carangiform Robot Fish  + (Submitted, IEEE International Conference on Robotics and Automation, May 2001)
• Model Predictive Control for Signal Temporal Logic Specifications  + (Submitted, IEEE T. Automatic Control (2 Jan 2016))
• Specification and Synthesis of Reactive Protocols for Aircraft Electric Power Distribution  + (Submitted, IEEE T. Control of Networked Systems (14 Nov 2013))
• Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications  + (Submitted, IEEE Transactions on Automatic Control, 2023)
• Flow-Based Synthesis of Reactive Tests for Discrete Decision-Making Systems with Temporal Logic Specifications  + (Submitted, IEEE Transactions on Robotics, 2024)
• Inversion Based Trajectory Optimization  + (Submitted, IFAC Symposium on Nonlinear Control Systems Design (NOLCOS))
• Contracts of Reactivity  + (Submitted, Int'l Conf on Formal Modeling and Analysis of Timed Systems (FORMATS) 2019)
• Bootstrapping bilinear models of simple vehicles  + (Submitted, International Journal of Robotics Research (IJRR), Dec 2013)
• Reasoning over Test Specifications using Assume-Guarantee Contracts  + (Submitted, NASA Formal Methods (NFM), 2023)
• Analysis of primitive genetic interactions for the design of a genetic signal differentiator  + (Submitted, OUP Synthetic Biology, May 2019)
• The effects of time-varying temperature on delays in genetic networks  + (Submitted, SIAM J. Applied Dynamical Systems (SIADS))
• Convex Optimal Uncertainty Quantification  + (Submitted, SIAM Journal on Optimization (28 Nov 2013))
• Negative Feedback Facilitates Temperature Robustness in Biomolecular Circuit Dynamics  + (Submitted, Synthetic Biology: Engineering, Evolution and Design (SEED))

• A MATLAB toolbox for modeling genetic circuits in cell-free systems  + (Synthetic Biology, 6(1):ysab007, 2021)
• Optimal LQG control across packet-dropping links  + (Systems and Control Letters, 56(6):439-446)
• Protein degradation in a TX-TL cell-free expression system using ClpXP protease  + (Technical Report, 7 July 2014)
• Flight control in a flapping-wing fruit fly simulator  + (The Neuromorphic Engineer)
• Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations  + (To appear in IFAC Conference on Analysis and Design of Hybrid Systems (ADHS), 2018)
• Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams  + (To appear in Robotics: Science and Systems (RSS), 2018.)
• When are Distributed Algorithms Robust?  + (To appear, 2006 Conference on Decision and Control (CDC))
• On Sensor Coverage by Mobile Sensors  + (To appear, 2006 Conference on Decision and Control (CDC))
• Model-Based Estimation of Off-Highway Road Geometry using Single-Axis LADAR and Inertial Sensing  + (To appear, 2006 International Conference on Robotics and Automation (ICRA))
• Frequency-Weighted Model Reduction with Applications to Structured Models  + (To appear, 2007 American Control Conference (ACC))
• Bioligically Inspired Feedback Design for Drosophila Flight  + (To appear, 2007 American Control Conference (ACC))
• Convex optimal uncertainty quantification: Algorithms and a case study in energy storage placement for power grids  + (To appear, 2013 American Control Conference (ACC))
• Automaton-Guided Controller Synthesis for Nonlinear Systems with Temporal Logic  + (To appear, 2013 International Conference on Intelligent Robots and Systems (IROS))
• Voluntary lane-change policy synthesis with reactive control improvisation  + (To appear, 2018 Conference on Decision and Control (CDC))
• Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts  + (To appear, 2018 Conference on Decision and Control (CDC))
• Role of interaction network topology in controlling microbial population in consortia  + (To appear, 2018 Conference on Decision and Control (CDC))
• End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks  + (To appear, 2019 AAAI Conference on Artificial Intelligence)
• Inverse Abstraction of Neural Networks Using Symbolic Interpolation  + (To appear, 2019 AAAI Conference on Artificial Intelligence)
• Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions  + (To appear, 2020 Conference on Decision and Control (CDC))
• Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications  + (To appear, 2021 Conference on Decision and Control)
• Time-Optimal Navigation in Uncertain Environments with High-Level Specifications  + (To appear, 2021 Conference on Decision and Control (CDC))
• Robust Safe Control Synthesis with Disturbance Observer-Based Control Barrier Functions  + (To appear, 2022 Conference on Decision and Control (CDC))
• Evaluation Metrics of Object Detection for Quantitative System-Level Analysis of Autonomous Systems  + (To appear, 2023 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS))
• Specifying and Analyzing Networked and Layered Control Systems Operating on Multiple Clocks  + (To appear, 2024 Conference on Decision and Control (CDC))
• Synthesis of Reactive Switching Protocols from Temporal Logic Specifications  + (To appear, <i>IEEE T. Automatic Control</i>)
• Development of cell-free transcription-translation systems in three soil Pseudomonads  + (To appear, ACS Synthetic Biology, 2024)
• A Method for Cost-Effective and Rapid Characterization of Genetic Parts  + (To appear, Journal of Visualized Experiments (JoVE))
• Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response  + (To appear, Proceedings of the National Academy of Science (PNAS))
• Discrete State Estimators for Systems on a Lattice  + (To appear<i>, Automatica</i>)
• Bootstrapping bilinear models of robotic sensorimotor cascades  + (Workshop on the Algorithmic Foundations of Robotics (WAFR), 2010 (Submitted))
• Quantification and Minimization of Crosstalk Sensitivity in Networks  + (arXiv, q-bio.MN)
• Networks with the Smallest Average Distance and the Largest Average Clustering  + (arXiv, q-bio.MN)
• Synthesis of Reactive Protocols for Vehicle-to-Vehicle Communication  + (arXiv:1210.2035)
• How to model DNA replication in stochastic models of synthetic genetic circuits (and why)  + (bioRxiv 2021.09.26.461880)
• Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli  + (bioRxiv 614529, 2019 (revised 2020, 2022))
• Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA  + (bioRxiv 858266)
• System-level studies of a cell-free transcription-translation platform for metabolic engineering  + (bioRxiv Technical Report)
• Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking  + (bioRxiv preprint)
• Synthetic logic circuits using RNA aptamer against T7 RNA polymerase  + (bioRxiv, 4 Sep 2014)
• Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation  + (qBio 2019 Conference)
• Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits  + (qBio 2019 Conference)
• Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design  + (qBio Conference 2019)