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List of results

• Protein degradation in a TX-TL cell-free expression system using ClpXP protease  + (2014g)
• Synthetic logic circuits using RNA aptamer against T7 RNA polymerase  + (2014h)
• Variable Elimination for Scalable Receding Horizon Temporal Logic Planning  + (2014i)
• An Iterative Abstraction Algorithm for Reactive Correct-by-Construction Controller Synthesis  + (2014j)
• Online Horizon Selection in Receding Horizon Temporal Logic Planning  + (2014j)
• Reactive Synthesis from Signal Temporal Logic Specifications  + (2014j)
• Cross-entropy Temporal Logic Motion Planning  + (2014j)
• A State-space Realization Approach to Set Identification of Biochemical Kinetic Parameters  + (2014k)
• A Risk-Aware Architecture for Resilient Spacecraft Operations  + (2014l)
• Characterization of minimum inducer separation time for a two-input integrase-based event detector  + (2014m)
• Systematic Design and Implementation of a Novel Synthetic Fold-Change Detector Biocircuit In Vivo  + (2014m)
• Robust Model Predictive Control for Signal Temporal Logic Synthesis  + (2014n)
• Multi-dimensional state estimation in adversarial environment  + (2015a)
• Rapid prototyping of biomolecular circuits through module characterization in cell-free expression systems  + (2015a)
• Prototyping 1,4-butanediol (BDO) biosynthesis pathway in a cell-free transcription-translation (TX-TL) system  + (2015b)
• Design of a Toolbox of RNA Thermometers  + (2015b)
• Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (2015b)
• Synthesis from multi-paradigm specifications  + (2015c)
• Global Dynamical Structure Reconstruction from Reconstructed Dynamical Structure Subnetworks: Applications to Biochemical Reaction Networks  + (2015d)
• Quantitative Performance Bounds in Biomolecular Circuits due to Temperature Uncertainty  + (2015d)
• Control System Analysis on Symmetric Cones  + (2015d)
• Synthesis of Distributed Longitudinal Control 1 Protocols for a Platoon of Autonomous Vehicles  + (2015d)
• Engineering Principles of Synthetic Biochemical Oscillators with Negative Cyclic Feedback  + (2015d)
• A stochastic framework for the design of transient and steady state behavior of biochemical reaction networks  + (2015d)
• Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions  + (2015e)

• Application of Correct-by-Construction Principles for a Resilient Risk-Aware Architecture  + (2015f)

• The effects of time-varying temperature on delays in genetic networks  + (2015g)
• Linear System Identifiability from Distributional and Time Series Data  + (2015h)
• Symbolic construction of GR(1) contracts for systems with full information  + (2015h)
• Rapid cell-free forward engineering of novel genetic ring oscillators  + (2015i)
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (2015j)
• Use of population-level cell-state switching for recording transient inducer pulses  + (2015j)
• Rapid in vitro engineering of 16 two-input logic gates  + (2015j)
• Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications  + (2015k)
• An analytical approach to bistable biological circuit discrimination using real algebraic geometry  + (2015l)
• Interfacing TuLiP with the JPL Statechart Autocoder: Initial progress toward synthesis of flight software from formal specifications  + (2015m)
• Model Predictive Control for an Uncertain Smart Thermal Grid  + (2015n)
• Model Predictive Control for Signal Temporal Logic Specifications  + (2016a)
• Design Space Exploration of the Violacein Pathway in Escherichia coli Based Cell-Free System  + (2016b)
• Design and application of stationary phase combinatorial promoters  + (2016b)
• The role of single occupancy effects on integrase dynamics in a cell-free system  + (2016b)
• Stochastic Gene Expression in Single Gene Oscillator Variants  + (2016b)
• Synthesis of Control Protocols for Switched Electrical Power Systems for Commercial Applications with Safety Specifications  + (2016c)
• A population-based temporal logic gate for timing and recording chemical events  + (2016d)
• Control design for hybrid systems with TuLiP: The temporal logic planning toolbox  + (2016e)
• Connected Cruise Control Design Using Probabilistic Model Checking  + (2016f)
• Enhancing tolerance to unexpected jumps in GR(1) games  + (2016g)
• Fast Automatic Verification of Large-Scale Systems with Lookup Tables  + (2016h)
• The Effect of Compositional Context on Synthetic Gene Networks  + (2016i)
• Quantifying Resource Competition and its Effects in the TX-TL System  + (2016k)
• A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response  + (2016l)