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List of results

• The effects of time-varying temperature on delays in genetic networks  + (2015g)
• Linear System Identifiability from Distributional and Time Series Data  + (2015h)
• Symbolic construction of GR(1) contracts for systems with full information  + (2015h)
• Rapid cell-free forward engineering of novel genetic ring oscillators  + (2015i)
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (2015j)
• Use of population-level cell-state switching for recording transient inducer pulses  + (2015j)
• Rapid in vitro engineering of 16 two-input logic gates  + (2015j)
• Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications  + (2015k)
• An analytical approach to bistable biological circuit discrimination using real algebraic geometry  + (2015l)
• Interfacing TuLiP with the JPL Statechart Autocoder: Initial progress toward synthesis of flight software from formal specifications  + (2015m)
• Model Predictive Control for an Uncertain Smart Thermal Grid  + (2015n)
• Model Predictive Control for Signal Temporal Logic Specifications  + (2016a)
• Design Space Exploration of the Violacein Pathway in Escherichia coli Based Cell-Free System  + (2016b)
• Design and application of stationary phase combinatorial promoters  + (2016b)
• The role of single occupancy effects on integrase dynamics in a cell-free system  + (2016b)
• Stochastic Gene Expression in Single Gene Oscillator Variants  + (2016b)
• Synthesis of Control Protocols for Switched Electrical Power Systems for Commercial Applications with Safety Specifications  + (2016c)
• A population-based temporal logic gate for timing and recording chemical events  + (2016d)
• Control design for hybrid systems with TuLiP: The temporal logic planning toolbox  + (2016e)
• Connected Cruise Control Design Using Probabilistic Model Checking  + (2016f)
• Enhancing tolerance to unexpected jumps in GR(1) games  + (2016g)
• Fast Automatic Verification of Large-Scale Systems with Lookup Tables  + (2016h)
• The Effect of Compositional Context on Synthetic Gene Networks  + (2016i)
• Quantifying Resource Competition and its Effects in the TX-TL System  + (2016k)
• A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response  + (2016l)
• Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (2016x)

• Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli  + (2017a)
• Engineering pulsatile communication in bacterial consortia  + (2017a)
• Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology  + (2017a)

• Hiding variables when decomposing specifications into GR(1) contracts  + (2017b)
• Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis  + (2017b)
• Population regulation in microbial consortia using dual feedback control  + (2017b)
• Learning-Based Abstractions for Nonlinear Constraint Solving  + (2017c)
• Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States  + (2017d)
• Synthesis of Correct-by-Construction Behavior Trees  + (2017e)
• Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks  + (2017e)
• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  + (2017f)
• Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli  + (2017g)
• Layering assume-guarantee contracts for hierarchical system design  + (2017h)
• System-level studies of a cell-free transcription-translation platform for metabolic engineering  + (2017i)
• Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology  + (2017j)
• Length and time scales of cell-cell signaling circuits in agar  + (2017k)
• Control of bacterial population density with population feedback and molecular sequestration  + (2017k)
• Modeling Dynamic Transcriptional Circuits with CRISPRi  + (2017k)
• Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams  + (2017l)
• Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations  + (2017m)
• Single day construction of multi-gene circuits with 3G assembly  + (2018a)
• Long-distance communication in synthetic bacterial consortia through active signal propagation  + (2018a)
• Voluntary lane-change policy synthesis with reactive control improvisation  + (2018b)
• Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts  + (2018b)
• Role of interaction network topology in controlling microbial population in consortia  + (2018b)
• On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3  + (2018c)
• Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability  + (2018d)