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List of results
- Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor + (10.1021/acssynbio.5b00090)
- Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli + (10.1038/s41467-022-34361-y)
- Addressable and adaptable intercellular communication via DNA messaging + (10.1038/s41467-023-37788-z)
- How to model DNA replication in stochastic models of synthetic genetic circuits (and why) + (10.1101/2021.09.26.461880)
- Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation + (10.1101/2023.03.22.533877)
- Development of cell-free transcription-translation systems in three soil Pseudomonads + (10.1101/2023.06.09.544292)
- Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation + (10.1101/2023.10.20.563366)
- TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering + (10.1101/2023.10.24.563881)
- Impact of Chemical Dynamics of Commercial PURE Systems on Malachite Green Aptamer Fluorescence + (10.1101/2024.03.15.585317)
- Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency + (10.1101/2024.06.19.599772)
- A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology + (10.1101/2024.07.18.604150)
- Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation + (10.1101/591552)
- Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits + (10.1101/594879)
- Control of density and composition in an engineered two-member bacterial community + (10.1101/632174)
- An automated model reduction tool to guide the design and analysis of synthetic biological circuits + (10.1101/640276)
- Design of a genetic layered feedback controller in synthetic biological circuitry + (10.1101/647057)
- Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design + (10.1101/659714)
- Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA + (10.1101/858266)
- A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths + (10.1109/ISSCC42615.2023.10067325)
- Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles + (10.1109/TRO.2023.3247951)
- Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates + (10.1111/1751-7915.13764)
- Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape + (10.21105/joss.05057)
- Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications + (10.48550/arXiv.2301.09622)
- Specifying and Analyzing Networked and Layered Control Systems Operating on Multiple Clocks + (10.48550/arXiv.2402.11666)
- Flow-Based Synthesis of Reactive Tests for Discrete Decision-Making Systems with Temporal Logic Specifications + (10.48550/arXiv.2404.09888)
- Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli + (https://doi.org/10.1101/614529)