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List of results

• Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology  + (Victoria Hsiao)
• Engineering pulsatile communication in bacterial consortia  + (James Parkin)
• The role of single occupancy effects on integrase dynamics in a cell-free system  + (Georgios Artavanis)
• Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology  + (Anandh Swaminathan)
• Design and application of stationary phase combinatorial promoters  + (Victoria Hsiao)
• A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response  + (Ania-Ariadna Baetica)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (Anandh Swaminathan)
• A population-based temporal logic gate for timing and recording chemical events  + (Victoria Hsiao)
• Design and implementation of a synthetic biomolecular concentration tracker  + (Victoria Hsiao, Emmanuel LC de los Santos, Weston R Whitaker, John E Dueber, Richard M Murray)
• Use of population-level cell-state switching for recording transient inducer pulses  + (Victoria Hsiao, Yutaka Hori, Paul W.K. Rothemund, Richard M. Murray)
• Characterization of minimum inducer separation time for a two-input integrase-based event detector  + (Victoria Hsiao, Yutaka Hori, and Richard M Murray)
• Data Transmission over Networks for Estimation  + (Vijay Gupta , Amir F. Dana, Joao P. Hespanha and Richard M. Murray)
• Data Transmission over Networks for Estimation and Control  + (Vijay Gupta, Amir F Dana, Jo ao P Hespanha, Richard M Murray, Babak Hassibi)
• On the Effect of Quantization on Performance  + (Vijay Gupta, Amir F. Dana, Richard M Murray, Babak Hassibi)
• A Sub-optimal Algorithm to Synthesize Control Laws for a Network of Dynamic Agents  + (Vijay Gupta, Babak Hassibi, Richard M. Murray)
• On the Synthesis of Control Laws for a Network of Autonomous Agents  + (Vijay Gupta, Babak Hassibi, Richard M. Murray)
• Stability Analysis of Stochastically Varying Formations of Dynamic Agents  + (Vijay Gupta, Babak Hassibi, Richard M. Murray)
• On a Cooperative Pursuit Strategy  + (Vijay Gupta, Cedric Langbort, Richard M. Murray)
• When are Distributed Algorithms Robust?  + (Vijay Gupta, Cedric Langbort, Richard M. Murray)
• On Sensor Coverage by Mobile Sensors  + (Vijay Gupta, David E. Jeffcoat, Richard M. Murray)
• Optimal LQG Control Across a Packet-Dropping Link  + (Vijay Gupta, Demetri Spanos, Babak Hassibi, Richard M Murray)
• On LQG Control Across a Stochastic Packet-Dropping Link  + (Vijay Gupta, Demetri Spanos, Babak Hassibi, Richard M. Murray)
• On Sensor Fusion in the Presence of Packet-Dropping Communication Channels  + (Vijay Gupta, Richard M. Murray, Babak Hassibi)
• On the Control of Jump Linear Markov Systems with Markov State Estimation  + (Vijay Gupta, Richard M. Murray, Babak Hassibi)
• Sensor Scheduling Algorithms Requiring Limited Computation  + (Vijay Gupta, Timothy Chung, Babak Hassibi and Richard M. Murray)
• On a Stochastic Sensor Selection Algorithm with Applications in Sensor Scheduling and Sensor Coverage  + (Vijay Gupta, Timothy H. Chung, Babak Hassibi, Richard M.Murray)

• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  + (Vipul Singhal)
• An In Silico Modeling Toolbox for Rapid Prototyping of Circuits in a Biomolecular “Breadboard” System  + (Vipul Singhal)
• A MATLAB toolbox for modeling genetic circuits in cell-free systems  + (Vipul Singhal)

• Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability  + (Vipul Singhal and Richard M. Murray)
• J2 Dynamics and Formation Flight  + (W. S. Koon, J. E. Marsden, J. Masdemont and R. M. Murray)
• A Homotopy Algorithm for Approximating Geometric Distributions by Integrable Systems  + (Willem M. Sluis, Andzrej Banaszuk, John Hauser, Richard M. Murray)
• Model Predictive Control of Coordinated Multi-Vehicle Formations  + (William B. Dunbar and Richard M. Murray)
• Distributed Receding Horizon Control with Applications to Multi-Vehicle Formation Stabilization  + (William B. Dunbar and Richard M. Murray)
• Receding Horizon Control of Multi-Vehicle Formations: A Distributed Implementation  + (William B. Dunbar and Richard M. Murray)
• Model Predictive Control of a Thurst-Vectored Flight Control Experiment  + (William B. Dunbar, Mark B. Milam, Ryan Franz and Richard M. Murray)
• BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts  + (William Poole)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (Anandh Swaminathan)
• Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline  + (Ayush Pandey)
• Analysis of primitive genetic interactions for the design of a genetic signal differentiator  + (Wolfgang Halter)
• Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts  + (Wolfgang Halter)
• Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows  + (Apurva Badithela)
• Flow-Based Synthesis of Reactive Tests for Discrete Decision-Making Systems with Temporal Logic Specifications  + (Josefine B. Graebener)
• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  + (X. Flora Meng)
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (Xianglin Meng, Ania A. Baetica, Vipul Singhal, and Richard M. Murray)
• Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations  + (Xinying Ren)
• Population regulation in microbial consortia using dual feedback control  + (Xinying Ren)
• Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia  + (Xinying Ren)
• Role of interaction network topology in controlling microbial population in consortia  + (Xinying Ren)
• Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations  + (Xinying Ren)
• Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design  + (Leopold N. Green)
• Communication and sensing trade-offs in cooperative mobile networks  + (Y Mostofi, R Murray)
• To Drop or Not to Drop: Design Principles for Kalman Filtering Over Wireless Fading Channels  + (Y Mostofi, Richard M Murray)