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List of results

• Rapid cell-free forward engineering of novel genetic ring oscillators  +
• Characterizing and Prototyping Genetic Networks with Cell-Free Transcription-Translation Reactions  +
• Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  +
• Synthetic circuit for exact adaptation and fold-change detection  +
• Design and application of stationary phase combinatorial promoters  +
• A population-based temporal logic gate for timing and recording chemical events  +
• Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks  +
• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  +
• Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli  +
• Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology  +
• A MATLAB toolbox for modeling genetic circuits in cell-free systems  +
• A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression  +
• An automated model reduction tool to guide the design and analysis of synthetic biological circuits  +
• Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits  +
• Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli  +
• A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology  +
• Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations  +
• BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts  +
• Analysis of Circuits for Dosage Control in Microbial Populations  +
• Synthetic mammalian signaling circuits for robust cell population control  +
• Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions  +
• Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations  +
• Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking  +
• Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks  +
• Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models  +
• Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation  +
• Addressable and adaptable intercellular communication via DNA messaging  +
• Development of cell-free transcription-translation systems in three soil Pseudomonads  +
• A chemical reaction network model of PURE  +
• Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation  +
• TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering  +
• Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency  +
• A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology  +
• Impact of Chemical Dynamics of Commercial PURE Systems on Malachite Green Aptamer Fluorescence  +