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2019g_ham19-oupsynbio
- Analysis of primitive genetic interactions for the design of a genetic signal differentiator
- Wolfgang Halter, Richard M. Murray, Frank Allgower
- Submitted, OUP Synthetic Biology, May 2019
2019g_pm19-formats
- Contracts of Reactivity
- Tung Phan-Minh and Richard M. Murray
- Submitted, Int'l Conf on Formal Modeling and Analysis of Timed Systems (FORMATS) 2019
2019f_PM19-iwbda
- An automated model reduction tool to guide the design and analysis of synthetic biological circuits
- Ayush Pandey, Richard M. Murray
- 2019 International Workshop on Biodesign Automation (IWBDA)
2019e_MMEL19-abb
- A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression
- John B. McManus, Richard M. Murray, Peter A. Emanuel, Matthew W. Lux
- Archives of Biochemistry and Biophysics, Volume 674, 15 October 2019, 108045
2019d_pcm19-cdc
- Towards Assume-Guarantee Profiles for Autonomous Vehicles
- Tung Phan-Minh, Karena X. Cai, Richard M. Murray
- Submitted, 2019 Conference on Decision and Control (CDC)
2019c_GHRM19-qbio
- Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design
- Leopold N. Green, Chelsea Y. Hu, Xinying Y. Ren, Richard M. Murray
- qBio Conference 2019
2019c_HFM19-qbio
- Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits
- Andrew D. Halleran, Emanuel Flores-Bautista, Richard M. Murray
- qBio 2019 Conference
2019c_MM19-qbio
- Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation
- John P. Marken, Richard M. Murray
- qBio 2019 Conference
2019b_HM19-seed
- Design of a genetic layered feedback controller in synthetic biological circuitry
- Chelsea Y. Hu, Richard M. Murray
- 2019 Synthetic Biology: Engineerinng, Evolution and Design (SEED) Conference
2019b_MPM19-seed
- Control of density and composition in an engineered two-member bacterial community
- Reed D. McCardell, Ayush Pandey, Richard M. Murray
- Submitted, 2019 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference
2019b_SM19-seed
- Proof of concept continuous event logging in living cells
- Andrey Shur, Richard M. Murray
- 2019 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference
2019a_SPHM19-biorxiv
- Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape
- Anandh Swaminathan, William Poole, Victoria Hsiao, Richard M. Murray, Ayush Pandey
- bioRxiv
2018g_blom18-cellsys
- Guidelines for Designing the Antithetic Feedback Motif
- Ania-Ariadna Baetica, Yoke Peng Leong, Richard M. Murray
- Physical Biology, 17(5):055002, 2020
2018g_ols+18-cellsys
- Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems
- Noah Olsman, Ania-Ariadna Baetica, Fangzhou Xiao, Yoke Peng Leong, John Doyle, Richard Murray
- Submitted, Cell Systems (Nov 2018)
2018f_rm19-ecc
- Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia
- Xinying Ren, Richard M Murray
- Submitted, 2019 European Control Conference
2018f_mhm19-ecc
- Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits
- Michaelle N. Mayalu, Harman Mehta and Richard M. Murray
- Submitted, 2019 European Control Conference (ECC)
2018e_dgm19-aiaa
- Inverse Abstraction of Neural Networks Using Symbolic Interpolation
- Sumanth Dathathri, Sicun Gao, Richard M. Murray
- To appear, 2019 AAAI Conference on Artificial Intelligence
2018e_comb19-aiaa
- End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks
- Richard Cheng, Gabor Orosz, Richard M. Murray, Joel W. Burdick
- To appear, 2019 AAAI Conference on Artificial Intelligence
2018d_chmc19-acc
- Robust Estimation Framework with Semantic Measurements
- Karena X. Cai, Alexei Harvard, Richard M. Murray, Soon-Jo Chung
- Submitted, 2019 American Control Conference (ACC)
2018d_gsma19-acc
- Risk-aware motion planning for automated vehicle among human-driven cars
- Jin I. Ge, Bastian Schurmann, Richard M. Murray, and Matthias Althoff
- Submitted, 2019 American Control Conference (ACC)
2018d_pha+19-acc
- A modal interface contract theory for guarded input/output automata with an application in traffic system design
- Tung Phan-Minh, Steve Guo, Bastian Schürmann, Matthias Althoff, and Richard M. Murray
- Submitted, 2019 American Control Conference (ACC)
2018d_sm19-acc
- Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability
- Vipul Singhal and Richard M. Murray
- Submitted, 2019 American Control Conference (ACC)
2018c_vai+18-anbio
- On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3
- A. Vaisha, S. Guo, R. M.Murray, P. J..Grandsard and Q. Chen
- Analytical Biochemistry, 556:70-77, 2018
2018b_rm18-cdc
- Role of interaction network topology in controlling microbial population in consortia
- Xinying Ren, Richard M Murray
- To appear, 2018 Conference on Decision and Control (CDC)
2018b_hamg18-cdc
- Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts
- Wolfgang Halter, Frank Allgower, Richard M. Murray and Andras Gyorgy
- To appear, 2018 Conference on Decision and Control (CDC)
2018b_gm18-cdc
- Voluntary lane-change policy synthesis with reactive control improvisation
- Jin I. Ge and Richard M. Murray
- To appear, 2018 Conference on Decision and Control (CDC)
2018a_pm18-seed
- Long-distance communication in synthetic bacterial consortia through active signal propagation
- James M Parkin, Richard M Murray
- 2018 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference
2018a_hsm18-seed
- Single day construction of multi-gene circuits with 3G assembly
- Andrew D Halleran, Anandh Swaminathan, Richard M Murray
- 2018 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference
2017m_hae+18-adhs
- Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations
- S. Haesaert, P. Nilsson, C. I. Vasile, R. Thakker, A. Agha-mohammadi, A. D. Ames and R. M. Murray
- To appear in IFAC Conference on Analysis and Design of Hybrid Systems (ADHS), 2018
2017l_nil+18-rss
- Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams
- P. Nilsson, S. Haesaert, C. Vasile, R. Thakker, A. Agha-mohammadi. R. M. Murray and A. D. Ames
- To appear in Robotics: Science and Systems (RSS), 2018.
2017k_cm18-wqbio
- Modeling Dynamic Transcriptional Circuits with CRISPRi
- Samuel E Clamons, Richard M Murray
- 2018 Winter q-bio
2017k_MHGM18-wqbio
- Control of bacterial population density with population feedback and molecular sequestration
- Reed D McCardell, Shan Huang, Leopold N Green, Richard M Murray
- 2018 Winter q-bio
2017k_dpm18-wqbio
- Length and time scales of cell-cell signaling circuits in agar
- Joy Doong, James Parkin, Richard M. Murray
- 2018 Winter q-bio
2017j_hsm17-ieeecsm
- Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology
- Victoria Hsiao, Anandh Swaminathan, and Richard M. Murray
- IEEE Control Systems Magazine, 38(3):32-62 , June 2018
2017i_wu+17-biorxiv
- System-level studies of a cell-free transcription-translation platform for metabolic engineering
- Yong Y. Wu, Hirokazu Sato, Hongjun Huang, Stephanie J. Culler, Julia Khandurina, Harish Nagarajan, Tae Hoon Yang, Stephen Van Dien, Richard M. Murray
- bioRxiv Technical Report
2017h_fm18-pieee
- Layering assume-guarantee contracts for hierarchical system design
- Ioannis Filippidis and Richard M. Murray
- Proceedings of the IEEE, 2018
2017g_HM17-biorxiv
- Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli
- Andrew Halleran, Richard M. Murray
- ACS Synthetic Biology, 7(2):752–755, 2017
2017f_mbsm17-rsi
- Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks
- X. Flora Meng, Ania-Ariadna Baetica, Vipul Singhal, Richard M. Murray
- Royal Society Interface, 14(130), 2017
2017e_yeu+17-cellsys
- Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks
- Enoch Yeung, Aaron J. Dy, Kyle B. Martin, Andrew H. Ng, Domitilla Del Vecchio, James L. Beck, James J. Collins, Richard M. Murray
- Cell Systems, 5(1):11–24.e12, 2017
2017e_cmo17-iros
- Synthesis of Correct-by-Construction Behavior Trees
- Michele Colledanchise, Richard M. Murray, and Petter Ogren
- Submitted, 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS)
2017d_dfm17-isrr
- Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States
- Sumanth Dathathri, Ioannis Filippidis and Richard M. Murray
- 2019 International Symposium on Robotics Research (ISRR)
2017c_dagm17-ijca
- Learning-Based Abstractions for Nonlinear Constraint Solving
- Sumanth Dathathri, Nikos Arechiga, Sicun Gao, and Richard M. Murray
- 2017 International Joint Conference on Artificial Intelligence (IJCAI)
2017b_ren+17-cdc
- Population regulation in microbial consortia using dual feedback control
- Xinying Ren, Ania-Ariadna Baetica, Anandh Swaminathan, Richard M. Murray
- Submitted, 2017 Conference on Decision and Control (CDC)
2017b_dm17-cdc
- Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis
- Sumanth Dathathri and Richard M. Murray
- 2017 Conference on Decision and Control (CDC)
2017b_fm17-cdc
- Hiding variables when decomposing specifications into GR(1) contracts
- Ioannis Filippidis and Richard M. Murray
- Submitted, 2017 Conference on Decision and Control (CDC)
2017a_shm17-seed
- Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology
- Anandh Swaminathan, Victoria Hsiao, Richard M Murray
- 2017 Synthetic Biology: Engineering, Evolution, and Design (SEED) Conference
2017a_phm17-seed
- Engineering pulsatile communication in bacterial consortia
- James Parkin, Victoria Hsiao, Richard M Murray
- Submitted, 2017 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference
2017a_sm17-seed
- Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli
- Andrey Shur and Richard M Murray
- Submitted, 2017 Synthetic Engineering: Engineering, Evolution and Design (SEED) Conference
2016x_dlS+16-acssynbio
- Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor
- E. L. de los Santos, J. T. Meyerowitz, S. L. Mayo, R. M. Murray
- ACS Synthetic Biology. 5(4):287-95, 2016
2016l_bae+17-qbio
- A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response
- Ania-Ariadna Baetica, Thomas Anthony Catanach, Victoria Hsiao, Richard Murray, James Beck
- 2017 Winter q-bio Conference
