Ayush Pandey
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| First name | Ayush |
|---|---|
| Last name | Pandey |
| Current position | Alumni |
| Department | CDS |
| Co-advisor | |
| Current project | AFOSR Syn Bio MURI |
| Other projects | |
| Previous projects | DARPA BioCon, NSF Cell Free |
| Graduated | |
| Previous positions | PhD student |
| URL | https://www.its.caltech.edu/~apandey/ |
| Subsequent positions |
Papers:
- Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design. Inigo Incer, Apurva Badithela, Josefine Graebener, Piergiuseppe Mallozzi, Ayush Pandey, Sheng-Jung Yu, Albert Benveniste, Benoit Caillaud, Richard M. Murray, Alberto Sangiovanni-Vincentelli, Sanjit A. Seshia. Submitted, ACM Transactions on Cyber-Physical Systems (TCPS), Aug 2023.
- A chemical reaction network model of PURE. Zoila Jurado, Ayush Pandey, Richard M. Murray. BioRxiv preprint, 2023.
- BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts. William Poole, Ayush Pandey, Zoltan Tuza, Andrey Shur, Richard M. Murray. PLoS Computational Biology, 18(4), e1009987, 2022.
- Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline. Ayush Pandey, Makena L. Rodriguez, William Poole, Richard M. Murray. ACS Synthetic Biology, 12(2):511–523, 2023.
- Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape. Anandh Swaminathan, William Poole, Victoria Hsiao, Ayush Pandey, and Richard M. Murray. Journal of Open Source Software (JOSS), 2023.
- From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology. Ayush Pandey, Inigo Incer, Alberto Sangiovanni-Vincentelli, Richard M. Murray. 2022 International Workshop on Biodesign Automation (IWBDA).
- Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models. Ayush Pandey, Richard M. Murray. International Journal on Robust and Nonlinear Control (IJRNC), 1-29, 2022.
- Robustness Guarantees for Structured Model Reduction of Dynamical Systems. Ayush Pandey, Richard M. Murray. IEEE Conference on Decision and Control (CDC), 2021.
- Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions. Liana N. Merk, Andrey S. Shur, Ayush Pandey, Richard M. Murray, Leopold N. Green. 3rd International Microbiome Engineering Conference.
- A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression. Ayush Pandey, Richard M. Murray. 2020 Winter q-bio.
- Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits. Ayush Pandey, Richard M. Murray. 2020 Winter q-bio.
- An automated model reduction tool to guide the design and analysis of synthetic biological circuits. Ayush Pandey, Richard M. Murray. 2019 International Workshop on Biodesign Automation (IWBDA).
- Control of density and composition in an engineered two-member bacterial community. Reed D. McCardell, Ayush Pandey, Richard M. Murray. Submitted, 2019 Synthetic Biology: Engineering, Evolution and Design (SEED) Conference.
