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Combined display of all available logs of Murray Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 01:13, 11 August 2024 Murray talk contribs created page Elisa Franco (Created page with "{{Group member |First name=Elisa |Last name=Franco |Department=CDS |Co-advisor=Erik Winfree |Previous positions=PhD student }}")
• 01:11, 11 August 2024 Murray talk contribs created page James Hindley (Created page with "{{Collaborator |First name=James |Last name=Hindley |Organization=Imperial College London |URL=https://profiles.imperial.ac.uk/j.hindley14 }}")
• 23:21, 10 August 2024 Murray talk contribs created page BE/EE/MedE 189a (Redirected page to BE/EE/MedE 189a, Fall 2024) Tag: New redirect
• 22:55, 10 August 2024 Murray talk contribs created page Hengyu Wang (Created page with "{{Group member |First name=Hengyu |Last name=Wang |Current position=MS student |Department=EE |Current project=AFOSR SynBio MURI }}")
• 22:45, 10 August 2024 Murray talk contribs created page Markus Meister (Created page with "{{Collaborator |First name=Markus |Last name=Meister |Organization=Caltech BBE |URL=https://meisterlab.caltech.edu }}")
• 22:44, 10 August 2024 Murray talk contribs created page Smruthi Karthikeyan (Created page with "{{Collaborator |First name=Smruthi |Last name=Smruthi |Organization=Caltech ESE |URL=https://smruthikarthikeyan.com }}")
• 22:43, 10 August 2024 Murray talk contribs created page Sal Ibarra (Created page with "{{Group member |First name=Sal |Last name=Ibarra |Current position=PhD student |Department=BE |Co-advisor=Smruthi Karthikeyan }}")
• 22:42, 10 August 2024 Murray talk contribs created page Han Zhang (Created page with "{{Group member |First name=Han |Last name=Zhang |Current position=PhD student |Department=BE |Co-advisor=Kaihang Wang }}")
• 22:41, 10 August 2024 Murray talk contribs created page Leo Li (Created page with "{{Group member |First name=Leo |Last name=Li |Current position=PhD student |Department=CNS |Co-advisor=Markus Meister }}")
• 15:53, 10 August 2024 Murray talk contribs created page BE/EE/MedE 189a, Fall 2024 (Created page with "{{Course |Course number=BE/EE/MedE 189a |Course title=Design and Construction of Biodevices |Year=2024 |Term=Fall |Lecture schedule=Tu/Th, 10:30-11:55 |Instructors=Richard Murray |Instructor office hours=Wed, 3-3:45 pm, Annenberg lounge |TAs=Anne Kil, Steven Lin |TA office hours=TBD }}")
• 15:34, 23 July 2024 User account Nuvia talk contribs was created automatically
• 21:04, 25 June 2024 User account Mjanssen talk contribs was created automatically
• 17:42, 25 June 2024 User account Dhakken talk contribs was created automatically
• 17:41, 25 June 2024 User account Lbjorn talk contribs was created automatically
• 13:07, 25 June 2024 Murray talk contribs created page File:Murray seed2024-firstpage.png
• 13:07, 25 June 2024 Murray talk contribs uploaded File:Murray seed2024-firstpage.png
• 14:53, 22 June 2024 Murray talk contribs created page SEED 2024 (Created page with "TBD")
• 19:35, 20 June 2024 User account Dvasyuty talk contribs was created automatically
• 02:02, 16 June 2024 Murray talk contribs created page ICB Synthetic Cell (Redirected page to Design and Implementation of Multi-Component Synthetic Cells) Tag: New redirect
• 16:25, 9 June 2024 Murray talk contribs created page Group Schedule, Summer 2024 (Created page with "This page contains information about various upcoming events that are of interest to the group. __NOTOC__ {| width=60% |- valign=top | width=50% | * Richard's calendar (travel) | width=50% | * Group Schedule, Spring 2023 |} The schedule for group and subgroup meetings is given below. Contact Richard if you need to change the schedule. Unless otherwise noted, biocircuits and synthetic cell meetings are in 111 Keck and NCS meetings are in 110 Steele. {|...")
• 04:18, 13 May 2024 Murray talk contribs created page Nok Wongpiromsarn, May 2024 (Created page with "Nok Wongpiromsarn, an Assistant Professor at Iowa State, will visit Caltech on 20-21 May 2024. 20 May 2024 * 9:30a: Open * 10:15a: Open * 10:30a: Open * 11:15a: Open * 12p-1:15p: Lunch * 1:15p: Open * 2:00p: Open * 2:45p: Open * 3:30p: Open * 4:15p: Open * ~6 pm: dinner with Richard 21 May 2024 * 10:15a: Open * 10:30a: Open * 11:15a: Open * 12-1p: Lunch * 1-3 pm: Apurva Badithela thesis defense * 3:00 pm: Open * 3:45 pm: Open * 4:30 pm: Open")
• 18:40, 10 April 2024 Murray talk contribs created page Katie Galloway, Apr 2024 (Created page with "Katie Galloway from MIT will visit on 15 Apr (Fri). Schedule: * 10:30a: Matt Kratz (meet at Red Door) * 11:15a: Zoila Jurado (meet at Red Door) * 12:00p: BBE faculty seminar (Michael Elowitz, 130 Chen) * 1:00p: Richard Murray (will be up at 1:30 Chen) * 1:45p: Inigo Incer (meet in Richard's office)")
• 21:00, 4 April 2024 User account Tmlee talk contribs was created automatically
• 14:30, 2 April 2024 Murray talk contribs created page David Moore, 5 Apr 2023 (Created page with "David Moore will visit Caltech on 5 Apr 2023 (Fri). Schedule: * 9:00 am: Pietro Perona * 9:45 am: Open (Murray group) * 10:30 am: Richard Murray * 11:15 am: Open (Murray group) * 12:00 pm: Lunch with interested students")
• 05:30, 1 April 2024 Murray talk contribs created page Template:Cds110 sp2024 pdf (Created page with "[[http:www.cds.caltech.edu/~murray/courses/cds110/sp2024/{{{1}}}|{{{2|{{{1}}}}}}]]")
• 20:37, 26 March 2024 User account Dgarciac talk contribs was created automatically
• 21:41, 25 March 2024 User account Philippe talk contribs was created automatically
• 17:02, 10 March 2024 Murray talk contribs created page Group Schedule, Spring 2024 (Created page with "his page contains information about various upcoming events that are of interest to the group. __NOTOC__ {| width=60% |- valign=top | width=50% | * Richard's calendar | width=50% | * Group Schedule, Winter 2024 |} The schedule for group and subgroup meetings is given below. Contact Richard if you need to change the schedule. Unless otherwise noted, biocircuits meetings are in 111 Keck and NCS meetings are in 110...")
• 06:12, 9 March 2024 Murray talk contribs moved page CDS 110/ChE 130, Spring 2024 to CDS 110/ChE 105, Spring 2024
• 06:11, 9 March 2024 Murray talk contribs created page CDS 110/ChE 105 (Redirected page to CDS 110/ChE 105, Spring 2024) Tag: New redirect
• 06:11, 3 February 2024 Murray talk contribs created page Anthony Fragoso (Created page with "{{Group member |First name=Anthony |Last name=Fragoso |Current position=Alumni |Department=AE |Co-advisor=Larry Matthies |Graduated=2017/10/11 |Previous positions=PhD student |Subsequent positions=Postdoc, California Institute of Technology (Soon-Jo Chung) U.S. Army Engineer Research and Development Center (ERDC) }}")
• 06:18, 29 January 2024 Murray talk contribs created page Trinity Lee (Created page with "{{Group member |First name=Trinity |Last name=Lee |Current position=Undergraduate |Department=BE |Previous positions=Undergraduate }}")
• 06:11, 29 January 2024 Murray talk contribs moved page CDS 110, Spring 2024 to CDS 110/ChE 130, Spring 2024
• 05:58, 23 January 2024 User account Ladeli talk contribs was created automatically
• 06:35, 20 January 2024 Murray talk contribs created page SURF discussions, Jan 2024 (Created page with "Slots for talking with applicants and co-mentors about SURF projects. Please sign up for one of the slots below. All times are PST. __NOTOC__ In preparation for our conversation, please do the following: * SURF students should work with their co-mentors to find a time the meeting/Zoom call. (For Zoom calls, co-mentors should initiate.) * Please make sure you have read the material in the description of your project, so that you are prepared to talk about what the pro...")
• 19:36, 16 January 2024 User account Hzhang9 talk contribs was created automatically
• 20:16, 15 January 2024 Murray talk contribs created page File:ICB24-syncell.png
• 20:16, 15 January 2024 Murray talk contribs uploaded File:ICB24-syncell.png
• 20:09, 15 January 2024 Murray talk contribs created page Design and Implementation of Multi-Component Synthetic Cells (Created page with "{{subst:project boilerplate}} {{Project |Title=Design and Implementation of Multi-Component Synthetic Cells |Agency=ARO/ICB |Grant number=TBD |Start date=1 Dec 2023 |End date=30 Nov 2028 |Support summary=1 graduate student, part-time technician |Reporting requirements=Annual report |Project ID=ICB24-syncell }}")
• 01:21, 3 January 2024 User account Stalukde talk contribs was created automatically
• 02:00, 30 December 2023 Yz473 talk contribs created page SURF 2024: Making Purer PURE (Created page with "'''2024 SURF project description''' __NOTOC__ * Mentor: Richard Murray * Co-mentors: Yan Zhang and Zachary Martinez <b>Main Objective:</b> Reduce background contaminant of One-Pot PURE systems === Introduction === The PURE (Protein Synthesis Using Recombinant Enzymes) system uses a defined set of 36 enzymes necessary for transcription, translation, and energy cycling to create a minimal system to support protein expression. This minimal system allows fa...")
• 21:34, 27 December 2023 Murray talk contribs created page Efficient local validation of partially ordered models via Baysian directed sampling (Created page with "{{Paper |Title=Efficient local validation of partially ordered models via Baysian directed sampling |Authors=Kellan Moorse and Richard Murray |Source=Submitted, 2024 American Control Conference (ACC) |Abstract=We consider the problem of estimating the subset of test conditions under which a simplified model—or set of simplified models—accurately approximates the behavior of a true system. We approach the problem by proposing a compact set of possible test conditions,...")
• 21:22, 27 December 2023 Murray talk contribs created page Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli (Created page with "{{Paper |Title=Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli |Authors=Rory L. Williams and Richard M. Murray |Source=<i>Nature Communications<i>, 13:6822, 2022 |Abstract=Advances in synthetic biology, bioengineering, and computation allow us to rapidly and reliably program cells with increasingly complex and useful functions. However, because the functions we engineer cells to perform are typically...")
• 21:18, 27 December 2023 Murray talk contribs created page Addressable and adaptable intercellular communication via DNA messaging (Created page with "{{Paper |Title=Addressable and adaptable intercellular communication via DNA messaging |Authors=John P. Marken and Richard M. Murray |Source=<i>Nature Communications</i>, 14:2358, 2023 |Abstract=Engineered consortia are a major research focus for synthetic biologists because they can implement sophisticated behaviors inaccessible to single-strain systems. However, this functional capacity is constrained by their constituent strains’ ability to engage in complex communi...")
• 21:14, 27 December 2023 Murray talk contribs created page TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering (Created page with "{{Paper |Title=TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering |Authors=Zachary A Martinez, Richard M. Murray, Matt W. Thomson |Source=Submitted, 2024 SEED |Abstract=Deep-learning models have been rapidly adopted by many fields, partly due to the deluge of data humanity has amassed. In particular, the petabases of biological sequencing data enable the unsupervised training of protein language models that le...")
• 21:12, 27 December 2023 Murray talk contribs created page Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation (Created page with "{{Paper |Title=Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation |Authors=Elin M. Larsson, Richard M. Murray, Dianne K. Newman |Source=To appear, ACS Synthetic Biology, 2024 |Abstract=Microbial bioreporters hold promise for addressing challenges in medical and environmental applications. However, the difficulty of ensuring their stable persistence and function within the target environment remains a challe...")
• 21:09, 27 December 2023 Murray talk contribs created page A chemical reaction network model of PURE (Created page with "{{Paper |Title=A chemical reaction network model of PURE |Authors=Zoila Jurado, Ayush Pandey, Richard M. Murray |Source=BioRxiv preprint |Abstract=Cell-free expression systems provide a method for rapid DNA circuit prototyping and functional protein synthesis. While crude extracts remain a black box with many components carrying out unknown reactions, the PURE system contains only the required transcription and translation components for protein production. All proteins...")
• 21:07, 27 December 2023 Murray talk contribs created page Development of cell-free transcription-translation systems in three soil Pseudomonads (Created page with "{{Paper |Title=Development of cell-free transcription-translation systems in three soil Pseudomonads |Authors=Joseph T. Meyerowitz, Elin M. Larsson, Richard M. Murray |Source=To appear, ACS Synthetic Biology |Abstract=In vitro transcription-translation (TX-TL) can enable faster engineering of biological systems. This speed-up can be significant, especially in difficult-to-transform chassis. This work shows the successful development of TX-TL systems using three soil-deri...")
• 20:58, 27 December 2023 Murray talk contribs created page Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design (Created page with "{{Paper |Title=Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design |Authors=Inigo Incer, Apurva Badithela, Josefine Graebener, Piergiuseppe Mallozzi, Ayush Pandey, Sheng-Jung Yu, Albert Benveniste, Benoit Caillaud, Richard M. Murray, Alberto Sangiovanni-Vincentelli, Sanjit A. Seshia |Source=Submitted, ACM Transactions on Cyber-Physical Systems (TCPS), Aug 2023 |Abstract=Contract-based design is a method to facilitate modular system design. While ther...")
• 20:54, 27 December 2023 Murray talk contribs created page Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation (Created page with "{{Paper |Title=Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation |Authors=Manisha Kapasiawala and Richard M. Murray |Source=SEED 2023 |Abstract=Cell-free transcription-translation (TX-TL) systems have been used for diverse applications, from prototyping gene circuits to providing a platform for the development of synthetic life, but their performance is limited by issues such as batch-to-batch variabilit...")