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Combined display of all available logs of Murray Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 21:34, 27 December 2023 Murray talk contribs created page Efficient local validation of partially ordered models via Baysian directed sampling (Created page with "{{Paper |Title=Efficient local validation of partially ordered models via Baysian directed sampling |Authors=Kellan Moorse and Richard Murray |Source=Submitted, 2024 American Control Conference (ACC) |Abstract=We consider the problem of estimating the subset of test conditions under which a simplified model—or set of simplified models—accurately approximates the behavior of a true system. We approach the problem by proposing a compact set of possible test conditions,...")
• 21:22, 27 December 2023 Murray talk contribs created page Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli (Created page with "{{Paper |Title=Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli |Authors=Rory L. Williams and Richard M. Murray |Source=<i>Nature Communications<i>, 13:6822, 2022 |Abstract=Advances in synthetic biology, bioengineering, and computation allow us to rapidly and reliably program cells with increasingly complex and useful functions. However, because the functions we engineer cells to perform are typically...")
• 21:18, 27 December 2023 Murray talk contribs created page Addressable and adaptable intercellular communication via DNA messaging (Created page with "{{Paper |Title=Addressable and adaptable intercellular communication via DNA messaging |Authors=John P. Marken and Richard M. Murray |Source=<i>Nature Communications</i>, 14:2358, 2023 |Abstract=Engineered consortia are a major research focus for synthetic biologists because they can implement sophisticated behaviors inaccessible to single-strain systems. However, this functional capacity is constrained by their constituent strains’ ability to engage in complex communi...")
• 21:14, 27 December 2023 Murray talk contribs created page TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering (Created page with "{{Paper |Title=TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering |Authors=Zachary A Martinez, Richard M. Murray, Matt W. Thomson |Source=Submitted, 2024 SEED |Abstract=Deep-learning models have been rapidly adopted by many fields, partly due to the deluge of data humanity has amassed. In particular, the petabases of biological sequencing data enable the unsupervised training of protein language models that le...")
• 21:12, 27 December 2023 Murray talk contribs created page Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation (Created page with "{{Paper |Title=Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation |Authors=Elin M. Larsson, Richard M. Murray, Dianne K. Newman |Source=To appear, ACS Synthetic Biology, 2024 |Abstract=Microbial bioreporters hold promise for addressing challenges in medical and environmental applications. However, the difficulty of ensuring their stable persistence and function within the target environment remains a challe...")
• 21:09, 27 December 2023 Murray talk contribs created page A chemical reaction network model of PURE (Created page with "{{Paper |Title=A chemical reaction network model of PURE |Authors=Zoila Jurado, Ayush Pandey, Richard M. Murray |Source=BioRxiv preprint |Abstract=Cell-free expression systems provide a method for rapid DNA circuit prototyping and functional protein synthesis. While crude extracts remain a black box with many components carrying out unknown reactions, the PURE system contains only the required transcription and translation components for protein production. All proteins...")
• 21:07, 27 December 2023 Murray talk contribs created page Development of cell-free transcription-translation systems in three soil Pseudomonads (Created page with "{{Paper |Title=Development of cell-free transcription-translation systems in three soil Pseudomonads |Authors=Joseph T. Meyerowitz, Elin M. Larsson, Richard M. Murray |Source=To appear, ACS Synthetic Biology |Abstract=In vitro transcription-translation (TX-TL) can enable faster engineering of biological systems. This speed-up can be significant, especially in difficult-to-transform chassis. This work shows the successful development of TX-TL systems using three soil-deri...")
• 20:58, 27 December 2023 Murray talk contribs created page Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design (Created page with "{{Paper |Title=Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design |Authors=Inigo Incer, Apurva Badithela, Josefine Graebener, Piergiuseppe Mallozzi, Ayush Pandey, Sheng-Jung Yu, Albert Benveniste, Benoit Caillaud, Richard M. Murray, Alberto Sangiovanni-Vincentelli, Sanjit A. Seshia |Source=Submitted, ACM Transactions on Cyber-Physical Systems (TCPS), Aug 2023 |Abstract=Contract-based design is a method to facilitate modular system design. While ther...")
• 20:54, 27 December 2023 Murray talk contribs created page Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation (Created page with "{{Paper |Title=Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation |Authors=Manisha Kapasiawala and Richard M. Murray |Source=SEED 2023 |Abstract=Cell-free transcription-translation (TX-TL) systems have been used for diverse applications, from prototyping gene circuits to providing a platform for the development of synthetic life, but their performance is limited by issues such as batch-to-batch variabilit...")
• 20:52, 27 December 2023 Murray talk contribs created page Control education for societal-scale challenges: A community roadmap (Created page with "{{Paper |Title=Control education for societal-scale challenges: A community roadmap |Authors=John Anthony Rossiter, Christos G. Cassandras, João Hespanha, Sebastian Dormido, Luis de la Torre, Gireeja Ranade, Antonio Visioli, John Hedengren, Richard M. Murray, Panos Antsaklis, Francoise Lamnabhi-Lagarrigue, Thomas Parisini |Source=Annual Reviews in Control, 55:1-17, 2023 |Abstract=This article focuses on extending, disseminating and interpreting the findings of an IEEE C...")
• 20:49, 27 December 2023 Murray talk contribs created page Rules of the Road: Formal Guarantees for Autonomous Vehicles With Behavioral Contract Design (Redirected page to Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles) Tag: New redirect
• 20:43, 27 December 2023 Murray talk contribs created page A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths (Created page with "{{Paper |Title=A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths |Authors=Fatemeh Aghimand, Chelsea Hu, Saransh Sharma, Krishna K. Pochana, Richard M. Murray, Azita Emami |Source=2023 IEEE International Solid-State Circuits Conference (ISSCC) |Abstract=Integrated, low-cost and miniaturized devices that can detect clinically relevant biomarkers are crucial for the growing field of precision medicine as they can enable poi...")
• 20:39, 27 December 2023 Murray talk contribs created page Context-Aided Variable Elimination for Requirement Engineering (Created page with "{{Paper |Title=Context-Aided Variable Elimination for Requirement Engineering |Authors=Inigo Incer, Albert Benveniste, Richard M. Murray, Alberto Sangiovanni-Vincentelli, Sanjit A. Seshia |Source=Submitted, 2023 Formal Methods in Computer-Aided Design (FMCAD) |Abstract=Deriving system-level specifications from component specifications usually involves the elimination of variables that are not part of the interface of the top-level system. This paper presents algorithms f...")
• 20:32, 27 December 2023 Murray talk contribs created page Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications (Created page with "{{Paper |Title=Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications |Authors=Prithvi Akella, Mohamadreza Ahmadi, Richard M. Murray, Aaron D. Ames |Source=Submitted, IEEE Transactions on Automatic Control, 2023 |Abstract=We propose an adversarial, time-varying test-synthesis procedure for safety-critical systems without requiring specific knowledge of the underlying controller steering the system. From a broader test and eva...")
• 17:41, 27 December 2023 Murray talk contribs created page Richard Andersen (Created page with "{{Collaborator |First name=Richard |Last name=Andersen |Organization=BBE }}")
• 17:40, 27 December 2023 Murray talk contribs created page Nikos Mynhier (Created page with "{{Group member |First name=Nikos |Last name=Mynhier |Current position=PhD student |Co-advisor=Richard Andersen |LinkedIn=https://www.linkedin.com/in/nikos-mynhier-a8540b149/ }}")
• 16:50, 27 December 2023 Murray talk contribs created page Property:Subsequent positions (Created page with "This is a property of type Has type::Text.")
• 16:27, 27 December 2023 Murray talk contribs created page Kimia Hassibi (Created page with "{{Group member |First name=Kimia |Last name=Hassibi |Current position=Undergraduate |Department=CS }}")
• 21:46, 23 December 2023 Murray talk contribs created page Template:E/SEC 103 pdf (Created page with "[[http:www.cds.caltech.edu/~murray/courses/e-sec-103/{{{1}}}/{{{2}}}|{{{3|{{{2}}}}}}]]")
• 22:43, 22 December 2023 Murray talk contribs created page Bi/BE/CS 183 (Redirected page to Bi/BE/CS 183, Winter 2024) Tag: New redirect
• 05:49, 11 December 2023 Murray talk contribs moved page ICB synbiofilms to ICB Synthetic Biofilms
• 05:46, 11 December 2023 Murray talk contribs created page Steve Mayo (Created page with "{{Collaborator |First name=Stephen |Last name=Mayo |Organization=Caltech |URL=https://www.mayo.caltech.edu |Projects=ICB synbiofilms }}")
• 05:45, 11 December 2023 Murray talk contribs created page Blade Olson (Created page with "{{Group member |First name=Blade |Last name=Olson |Current position=PhD student |Co-advisor=Steve Mayo }}")
• 05:42, 11 December 2023 Murray talk contribs created page ICB synbiofilms (Redirected page to Control of Functional Bioenabled Materials using Synthetic Cells) Tag: New redirect
• 05:39, 11 December 2023 Murray talk contribs created page File:Icb-synbiofilm.png
• 05:39, 11 December 2023 Murray talk contribs uploaded File:Icb-synbiofilm.png
• 05:27, 11 December 2023 Murray talk contribs created page Control of Functional Bioenabled Materials using Synthetic Cells (Created page with "Place project description here. Use {{subst:project boilerplate}} to insert the standard boilerplate information. {{Project |Title=Control of Functional Bioenabled Materials using Synthetic Cells |Agency=ARO ICB |Grant number=W911NF19D90001 |Start date=1 Aug 2023 |End date=31 Jul 2025 |Support summary=2 graduate students |Reporting requirements=Annual reports |Project ID=ICB biomaterial }}")
• 19:54, 10 December 2023 Murray talk contribs created page Group Schedule, Winter 2024 (Created page with "This page contains information about various upcoming events that are of interest to the group. __NOTOC__ {| width=60% |- valign=top | width=50% | * Richard's calendar | width=50% | * Group Schedule, Fall 2023 |} The schedule for group and subgroup meetings is given below. Contact Richard if you need to change the schedule. Unless otherwise noted, biocircuits meetings are in 111 Keck and NCS meetings are in 110 S...")
• 22:29, 3 December 2023 Murray talk contribs created page Property:Lecture schedule (Created page with "This is a property of type Has type::Text. The allowed value for this property is:")
• 21:13, 3 December 2023 Murray talk contribs created page Property:TA office hours (Created page with "This is a property of type Has type::Text. The allowed value for this property is:")
• 21:13, 3 December 2023 Murray talk contribs created page Property:Instructor office hours (Created page with "This is a property of type Has type::Text. The allowed value for this property is:")
• 21:04, 3 December 2023 Murray talk contribs created page Template:Bi/BE/CS 183 public (Created page with "[[http:www.cds.caltech.edu/~murray/courses/bi-be-cs-183/wi2024/{{{1}}}|{{{2|{{{1}}}}}}]]")
• 20:07, 27 November 2023 Murray talk contribs created page SURF 2024 (Created page with "{{righttoc}} This page is intended for students interested in working on SURF projects in the Summer of 2024. It contains information about how to apply for a SURF project in my group along with a list of project areas. '''Note:''' Projects will be posted here starting after finals week and up to the start of classes. Please check back after that time for more information. === Applying for a SURF project === Because I get many students interested in doing SURFs in m...")
• 18:28, 26 November 2023 Murray talk contribs created page Property:LinkedIn (Created page with "This is a property of type Has type::URL.")
• 22:38, 5 November 2023 Murray talk contribs created page E/SEC 103, Winter 2024 (Created page with "{| width=100% |- | colspan=2 align=center | <font color='blue' size='+2'>Management of Technology</font>__NOTOC__ |- valign=top | width=50% | '''Instructors''' * Richard Murray (CDS/BE), murray@cds.caltech.edu * Stu Feldman and Eric Schmidt * Lectures: Mon/Wed, 1:30-2:55 pm | width=50% | '''Teaching Assistant''' * TBD * Office hours: TBD |} This is the public homepage for E/SEC 103, Spring 2023. This course is limited enrollment. All students interested in participati...")
• 16:11, 15 October 2023 Murray talk contribs created page Property:Course title (Created page with "This is a property of type Has type::Text. The allowed value for this property is:")
• 15:45, 15 October 2023 Murray talk contribs created page Bi/BE/CS 183, Winter 2024 (Created page with "{{Course |Course number=Bi/BE/CS 183 |Year=2024 |Term=Winter |Instructors=Richard Murray (CDS/BE) }}")
• 15:36, 15 October 2023 Murray talk contribs created page Admin/Courses (Created page with "This page contains information about the Course class, used for keeping track of courses. === Class structure === A course is a page in the Courses category with the properties listed below. This category is used to list courses on the Main Page as well as the Courses page. === Templates and Actions === * Special:FormEdit/Course - create a new Project entry ** Form:Course - form used to create a new project ** Template:Course...")
• 15:32, 15 October 2023 Murray talk contribs created page Property:Course number (Created a property of type Text)
• 15:32, 15 October 2023 Murray talk contribs created page Property:Term (Created a property of type Text)
• 15:32, 15 October 2023 Murray talk contribs created page Property:Instructors (Created a property of type Page)
• 15:31, 15 October 2023 Murray talk contribs created page Form:Course
• 15:30, 15 October 2023 Murray talk contribs created page Template:Course
• 20:31, 10 October 2023 Murray talk contribs created page Naira Hovakimyan, Oct 2023 (Created page with "Naira Hovakimyan will visit CDS on 18 Oct 2023 (Wed). If you would like to meet with her, please sign up below. * 9:15: open * 10:00: open * 10:45: seminar setup * 11:00: Seminar (location TBD) * 12:00: Lunch - Richard * 1:15: open * 2:00: open * 2:30: open * 3:00: CDS tea * 3:45: NCS group meeting * 5:00: depart <hr> <center> <font size="+1" color=blue>Safe Learning in Autonomous Systems</font> '''Naira Hovakimyan'''<br> UIUC </center> Abstract: Learning-based co...")
• 21:24, 8 September 2023 Murray talk contribs created page Group Schedule, Fall 2023 (Created page with "This page contains information about various upcoming events that are of interest to the group. __NOTOC__ {| width=60% |- valign=top | width=50% | * Richard's calendar | width=50% | * Group Schedule, Summer 2022 |} The schedule for group and subgroup meetings is given below. Contact Richard if you need to change the schedule. Unless otherwise noted, biocircuits group meetings are in 111 Keck and NCS group meeting...")
• 14:31, 3 August 2023 Murray talk contribs created page Andras Gyorgy, Aug 2023 (Created page with "Andras Gyorgy from NYU Abu Dhabi will visit on 7 Aug (Mon). == Schedule == * 9:30 am: Richard, 109 Steele * 10:00 am: open * 10:30 am: open * 11:00 am: Seminar, 111 Keck * 12:15 pm: Lunch with graduate students * 1:30 pm: open * 2:15 pm: open * 3:00 pm: open * 3:45 pm: open * 4:30 pm: done for the day")
• 01:51, 17 July 2023 Murray talk contribs created page Marta Kwiatkowska, Jul 2023 (Created page with "Marta Kwiatkowska from the University of Oxford will be visiting on 21 Jul (Fri). === Schedule === * 8:30 am: Open * 9:15 am: Open * 10:00 am: Richard Murray (109 Steele Lab) * 11:00 am: Seminar (121 Annenberg) * 12:00 pm: Lunch with Richard, Erik, Lulu * 1:30 pm: Lulu Qian * 2:15 pm: Erik Winfree * 3:00 pm: Open (T&E?) * 4:00 pm: Open (Pacti?) * 5:00 pm: done for the day === Abstract === TBD === Bio === Marta Kwiatkowska is Professor of Computing Systems and Fello...")
• 00:50, 10 July 2023 Murray talk contribs created page Schmidt SynCell (Redirected page to Upscaling Engineering of Synthetic Biomachines) Tag: New redirect
• 00:48, 10 July 2023 Murray talk contribs uploaded File:Schmidt-syncell.png
• 00:48, 10 July 2023 Murray talk contribs created page File:Schmidt-syncell.png