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List of results

• Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates  + (Microbial Biotechnology, 14( 6), 2448– 2462, 2021)
• Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks  + (Nature Communications 13(1):1-13, 2022)
• Regulatory activity revealed by dynamic correlations in gene expression noise  + (Nature Genetics, 40:1493-1498)
• Model reduction of interconnected linear systems  + (Optimal Control Applications and Methods, 2008 (to appear))
• BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts  + (PLoS Computational Biology, 18(4), e1009987, 2022)
• Optimal and Cooperative Control of Vehicle Formations  + (PhD Dissertation)
• Passive Control of Flutter and Forced Response in Bladed Disks via Mistuning  + (PhD Dissertation)
• Effects of Actuator Limits in Bifurcation Control with Applications to Active Control of Fluid Instabilities in Turbomachinery  + (PhD Dissertation, California Institute of Technology, June 2000)
• Coarse analysis of multiscale systems: diffuser flows, charged particle motion, and connections to averaging theory  + (PhD Dissertation, Caltech Aeronautics, May 2005)
• Nonlinear Control of Mechanical Systems: A Reimannian Geometry Approach  + (PhD Dissertation, Caltech, August 1998)
• Nonlinear Control of Rotating Stall and Surge with Axisymmetric Bleed and Air Injection on Axial Flow Compressors  + (PhD Dissertation, Caltech, August 1998)
• Exponential Stabilization of Driftless Nonlinear Control Systems  + (PhD Dissertation, Caltech, Dec 1994)
• Robotic Manipulation with Flexible Link Fingers  + (PhD Dissertation, Caltech, January 1997)
• Trajectory Generation for Nonlinear Control Systems  + (PhD Dissertation, Caltech, Jul 1996)
• Aspects of Geometric Mechanics and Control of Mechanical Systems  + (PhD Dissertation, Caltech, Jun 1995)
• The Mechanics and Control of Robotic Locomotion with Applications to Aquatic Vehicles  + (PhD Dissertation, Caltech, June 1998)
• Differentially Flat Nonlinear Control Systems  + (PhD Dissertation, Caltech, May 1997)
• Nonlinear Control and Modeling of Rotating Stall in an Axial Flow Compressor  + (PhD Dissertation, Caltech, Sep 1996)
• Distributed Gradient Systems and Dynamic Coordination  + (PhD Dissertation, Control and Dynamical Systems)
• Bio-Inspired Visuomotor Convergence in Navigation and Flight Control Systems  + (PhD Dissertation, Control and Dynamical Systems)
• State Estimation in Multi-Agent Decision and Control Systems  + (PhD Dissertation, Control and Dynamical Systems)
• Real-Time Optimal Trajectory Generation for Constrained Dynamical Systems  + (PhD Dissertation, Control and Dynamical Systems)
• Managing information in networked and multi-agent control systems  + (PhD Dissertation, Mechanical Engineering)
• System architectures and environment modeling for high-speed autonomous navigation  + (PhD Dissertation, Mechanical Engineering)
• Robotic Control and Nonholonomic Motion Planning  + (PhD Dissertation, UC Berkeley, Dec 1990)

• Real-time trajectory generation for constrained nonlinear dynamical systems using non-uniform rational B-spline basis functions  + (PhD dissertation, Control and Dynamical Systems, Nov 2007)

• Autonomous Driving in Urban Environments: Approaches, Lessons and Challenges  + (Philosophical Transactions of the Royal Society - A, 2009 (Submitted))
• Controlling biological networks by time-delayed signals  + (Philosophical Transactions of the Royal Society - A, 2009 (Submitted))
• Guidelines for Designing the Antithetic Feedback Motif  + (Physical Biology, 17(5):055002, 2020)
• Dynamics and stability of a class of low Reynolds number swimmers near a wall  + (Physical Review E, 19(4))
• Engineering Transcriptional Regulator Effector Specificity Through Rational Design and Rapid Prototyping  + (Presented at Synthetic Biology: Engineering, Evolution and Design (SEED), 14-18 July 2014)
• Prototyping 1,4-butanediol (BDO) biosynthesis pathway in a cell-free transcription-translation (TX-TL) system  + (Presented at Synthetic Biology: Engineering, Evolution and Design (SEED), 10-13 June 2015)
• Design of a Toolbox of RNA Thermometers  + (Presented at Synthetic Biology: Engineering, Evolution and Design (SEED), 10-13 June 2015)
• Design and Implementation of a Biomolecular Circuit for Tracking Protein Concentration  + (Presented, 2013 American Control Conference (ACC))
• Characterization of minimum inducer separation time for a two-input integrase-based event detector  + (Presented, 2015 Winter q-bio Conference (5 Nov 2014))
• Rapid in vitro engineering of 16 two-input logic gates  + (Presented, 2016 Winter q-Bio)
• Use of population-level cell-state switching for recording transient inducer pulses  + (Presented, 2016 Winter q-Bio (5 Nov 2015))
• Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively  + (Presented, 2016 Winter q-Bio Conference)
• Applications and Extensions of Goursat Normal Form to Control of Nonlinear Systems  + (Proceedings of the 32nd Conference on Decision and Control<br>December 1993)
• Exponential Stabilization of Driftless Nonlinear Control Systems via Time-varying, Homogeneous Feedback  + (Proceedings of the 32nd Conference on Decision and Control<br>December 1994)
• Geometric Phases, Control Theory, and Robotics  + (Proceedings of the Board on Mathematical Sciences, Science and Technology Symposium, Washington DC, 12 April 1994)
• Consensus and Cooperation in Networked Multi-Agent Systems  + (Proceedings of the IEEE, 95(1):215 - 233, 2007)
• Cone invariance and rendezvous of multiple agents  + (Proceedings of the Institution of Mechanical Engineers, Part G: Journal of Aerospace Engineering, 223(6):779-789)
• Trajectory Generation for Mechanical Systems with Application to Robotic Locomotion  + (Proceedings, 1998 Workshop on Algorithmic Foundations of Robotics)
• Minimally Constrained Testing for Autonomy with Temporal Logic Specifications  + (RSS 2022 Workshop on Envisioning an Infrastructure for Multi-Robot and Collaborative Autonomy Testing and Evaluation)
• Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation  + (SEED 2023)
• Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency  + (SEED, 2024)
• Dynamics and Stability of Low Reynolds Number Swimming Near a Wall  + (SIAM Journal of Applied Dynamical Systems (SIADS), 10(3):1013â1041)
• Analysis of Circuits for Dosage Control in Microbial Populations  + (Senior thesis)
• Simultaneous Stabilization of Stall and Surge via Axisymmetric Air Injection  + (Submitted, 1998 Conference on Control Applications)
• Constrained Trajectory Generation for Microsatellite Formation Flying  + (Submitted, 2001 AIAA Guidance, Navigation and Control Conference)