User contributions for Murray
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6 January 2024
- 18:3318:33, 6 January 2024 diff hist +127 Bi/BE/CS 183, Winter 2024 →Lecture Schedule
- 06:0406:04, 6 January 2024 diff hist −5 Bi/BE/CS 183, Winter 2024 No edit summary
- 06:0306:03, 6 January 2024 diff hist 0 Bi/BE/CS 183, Winter 2024 No edit summary
- 05:5905:59, 6 January 2024 diff hist +27 Bi/BE/CS 183, Winter 2024 No edit summary
- 05:5605:56, 6 January 2024 diff hist −12 E/SEC 103, Winter 2024 No edit summary
4 January 2024
- 15:1915:19, 4 January 2024 diff hist +1 SURF 2024 →Applying for a SURF project in my group current
31 December 2023
- 19:4719:47, 31 December 2023 diff hist +52 Bi/BE/CS 183, Winter 2024 No edit summary
- 17:1617:16, 31 December 2023 diff hist +3 m E/SEC 103, Winter 2024 →Course Text and References
- 17:1617:16, 31 December 2023 diff hist 0 m E/SEC 103, Winter 2024 →Course Text and References
30 December 2023
29 December 2023
- 15:4015:40, 29 December 2023 diff hist +43 E/SEC 103, Winter 2024 →Lecture Schedule
- 15:3915:39, 29 December 2023 diff hist −1 m E/SEC 103, Winter 2024 →Course Text and References
- 15:3815:38, 29 December 2023 diff hist −142 E/SEC 103, Winter 2024 →Course Text and References
- 15:3715:37, 29 December 2023 diff hist +357 E/SEC 103, Winter 2024 →Course Text and References
27 December 2023
- 21:3421:34, 27 December 2023 diff hist +1,374 N Efficient local validation of partially ordered models via Baysian directed sampling Created page with "{{Paper |Title=Efficient local validation of partially ordered models via Baysian directed sampling |Authors=Kellan Moorse and Richard Murray |Source=Submitted, 2024 American Control Conference (ACC) |Abstract=We consider the problem of estimating the subset of test conditions under which a simplified model—or set of simplified models—accurately approximates the behavior of a true system. We approach the problem by proposing a compact set of possible test conditions,..."
- 21:2621:26, 27 December 2023 diff hist 0 Control of Functional Bioenabled Materials using Synthetic Cells No edit summary
- 21:2521:25, 27 December 2023 diff hist 0 Template:Project collaborators No edit summary current
- 21:2521:25, 27 December 2023 diff hist 0 Template:Project additional participants No edit summary current
- 21:2421:24, 27 December 2023 diff hist 0 Template:Project current participants No edit summary current
- 21:2321:23, 27 December 2023 diff hist 0 Template:Project past participants No edit summary current
- 21:2221:22, 27 December 2023 diff hist +1,788 N Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli Created page with "{{Paper |Title=Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli |Authors=Rory L. Williams and Richard M. Murray |Source=<i>Nature Communications<i>, 13:6822, 2022 |Abstract=Advances in synthetic biology, bioengineering, and computation allow us to rapidly and reliably program cells with increasingly complex and useful functions. However, because the functions we engineer cells to perform are typically..." current
- 21:1921:19, 27 December 2023 diff hist −7 Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli No edit summary current
- 21:1821:18, 27 December 2023 diff hist +1,464 N Addressable and adaptable intercellular communication via DNA messaging Created page with "{{Paper |Title=Addressable and adaptable intercellular communication via DNA messaging |Authors=John P. Marken and Richard M. Murray |Source=<i>Nature Communications</i>, 14:2358, 2023 |Abstract=Engineered consortia are a major research focus for synthetic biologists because they can implement sophisticated behaviors inaccessible to single-strain systems. However, this functional capacity is constrained by their constituent strains’ ability to engage in complex communi..."
- 21:1421:14, 27 December 2023 diff hist +1,941 N TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering Created page with "{{Paper |Title=TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering |Authors=Zachary A Martinez, Richard M. Murray, Matt W. Thomson |Source=Submitted, 2024 SEED |Abstract=Deep-learning models have been rapidly adopted by many fields, partly due to the deluge of data humanity has amassed. In particular, the petabases of biological sequencing data enable the unsupervised training of protein language models that le..."
- 21:1221:12, 27 December 2023 diff hist +2,101 N Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation Created page with "{{Paper |Title=Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation |Authors=Elin M. Larsson, Richard M. Murray, Dianne K. Newman |Source=To appear, ACS Synthetic Biology, 2024 |Abstract=Microbial bioreporters hold promise for addressing challenges in medical and environmental applications. However, the difficulty of ensuring their stable persistence and function within the target environment remains a challe..."
- 21:0921:09, 27 December 2023 diff hist +6 A chemical reaction network model of PURE No edit summary
- 21:0921:09, 27 December 2023 diff hist +1,680 N A chemical reaction network model of PURE Created page with "{{Paper |Title=A chemical reaction network model of PURE |Authors=Zoila Jurado, Ayush Pandey, Richard M. Murray |Source=BioRxiv preprint |Abstract=Cell-free expression systems provide a method for rapid DNA circuit prototyping and functional protein synthesis. While crude extracts remain a black box with many components carrying out unknown reactions, the PURE system contains only the required transcription and translation components for protein production. All proteins..."
- 21:0721:07, 27 December 2023 diff hist +6 Development of cell-free transcription-translation systems in three soil Pseudomonads No edit summary
- 21:0721:07, 27 December 2023 diff hist +1,469 N Development of cell-free transcription-translation systems in three soil Pseudomonads Created page with "{{Paper |Title=Development of cell-free transcription-translation systems in three soil Pseudomonads |Authors=Joseph T. Meyerowitz, Elin M. Larsson, Richard M. Murray |Source=To appear, ACS Synthetic Biology |Abstract=In vitro transcription-translation (TX-TL) can enable faster engineering of biological systems. This speed-up can be significant, especially in difficult-to-transform chassis. This work shows the successful development of TX-TL systems using three soil-deri..."
- 20:5820:58, 27 December 2023 diff hist +20 Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design No edit summary
- 20:5820:58, 27 December 2023 diff hist +993 N Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design Created page with "{{Paper |Title=Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design |Authors=Inigo Incer, Apurva Badithela, Josefine Graebener, Piergiuseppe Mallozzi, Ayush Pandey, Sheng-Jung Yu, Albert Benveniste, Benoit Caillaud, Richard M. Murray, Alberto Sangiovanni-Vincentelli, Sanjit A. Seshia |Source=Submitted, ACM Transactions on Cyber-Physical Systems (TCPS), Aug 2023 |Abstract=Contract-based design is a method to facilitate modular system design. While ther..."
- 20:5520:55, 27 December 2023 diff hist −1 Center for Harnessing Microbiota from Military Environments (CHARMME) No edit summary current
- 20:5420:54, 27 December 2023 diff hist +2,672 N Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation Created page with "{{Paper |Title=Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation |Authors=Manisha Kapasiawala and Richard M. Murray |Source=SEED 2023 |Abstract=Cell-free transcription-translation (TX-TL) systems have been used for diverse applications, from prototyping gene circuits to providing a platform for the development of synthetic life, but their performance is limited by issues such as batch-to-batch variabilit..."
- 20:5220:52, 27 December 2023 diff hist +1,261 N Control education for societal-scale challenges: A community roadmap Created page with "{{Paper |Title=Control education for societal-scale challenges: A community roadmap |Authors=John Anthony Rossiter, Christos G. Cassandras, João Hespanha, Sebastian Dormido, Luis de la Torre, Gireeja Ranade, Antonio Visioli, John Hedengren, Richard M. Murray, Panos Antsaklis, Francoise Lamnabhi-Lagarrigue, Thomas Parisini |Source=Annual Reviews in Control, 55:1-17, 2023 |Abstract=This article focuses on extending, disseminating and interpreting the findings of an IEEE C..." current
- 20:4920:49, 27 December 2023 diff hist +87 N Rules of the Road: Formal Guarantees for Autonomous Vehicles With Behavioral Contract Design Redirected page to Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles current Tag: New redirect
- 20:4920:49, 27 December 2023 diff hist +17 Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles No edit summary current
- 20:4720:47, 27 December 2023 diff hist −2 Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape No edit summary
- 20:4720:47, 27 December 2023 diff hist +1,800 Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape No edit summary
- 20:4620:46, 27 December 2023 diff hist −1,799 Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape No edit summary
- 20:4420:44, 27 December 2023 diff hist 0 A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths No edit summary current
- 20:4420:44, 27 December 2023 diff hist 0 A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths No edit summary
- 20:4320:43, 27 December 2023 diff hist +1,667 N A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths Created page with "{{Paper |Title=A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths |Authors=Fatemeh Aghimand, Chelsea Hu, Saransh Sharma, Krishna K. Pochana, Richard M. Murray, Azita Emami |Source=2023 IEEE International Solid-State Circuits Conference (ISSCC) |Abstract=Integrated, low-cost and miniaturized devices that can detect clinically relevant biomarkers are crucial for the growing field of precision medicine as they can enable poi..."
- 20:4020:40, 27 December 2023 diff hist −3 A Model-Free Algorithm for Extremely Resilient Navigation No edit summary current
- 20:3920:39, 27 December 2023 diff hist +851 N Context-Aided Variable Elimination for Requirement Engineering Created page with "{{Paper |Title=Context-Aided Variable Elimination for Requirement Engineering |Authors=Inigo Incer, Albert Benveniste, Richard M. Murray, Alberto Sangiovanni-Vincentelli, Sanjit A. Seshia |Source=Submitted, 2023 Formal Methods in Computer-Aided Design (FMCAD) |Abstract=Deriving system-level specifications from component specifications usually involves the elimination of variables that are not part of the interface of the top-level system. This paper presents algorithms f..." current
- 20:3220:32, 27 December 2023 diff hist +1,915 N Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications Created page with "{{Paper |Title=Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications |Authors=Prithvi Akella, Mohamadreza Ahmadi, Richard M. Murray, Aaron D. Ames |Source=Submitted, IEEE Transactions on Automatic Control, 2023 |Abstract=We propose an adversarial, time-varying test-synthesis procedure for safety-critical systems without requiring specific knowledge of the underlying controller steering the system. From a broader test and eva..." current
- 20:2620:26, 27 December 2023 diff hist 0 Preprint archive No edit summary current
- 20:2520:25, 27 December 2023 diff hist +179 Preprint archive No edit summary
- 17:4217:42, 27 December 2023 diff hist +41 Richard Andersen No edit summary current
- 17:4117:41, 27 December 2023 diff hist +75 N Richard Andersen Created page with "{{Collaborator |First name=Richard |Last name=Andersen |Organization=BBE }}"
- 17:4017:40, 27 December 2023 diff hist +176 N Nikos Mynhier Created page with "{{Group member |First name=Nikos |Last name=Mynhier |Current position=PhD student |Co-advisor=Richard Andersen |LinkedIn=https://www.linkedin.com/in/nikos-mynhier-a8540b149/ }}" current
