MPP 2010 review: Difference between revisions
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This page contains information for the 2010 review of the Molecular Programming Project. | This page contains information for the 2010 review of the Molecular Programming Project. The information on this page reflects activities from July 2008 to September 2010. | ||
Other sources of information: | |||
* [[Molecular Programming Project|MPP project page for Richard Murray]] - lists students, activities, papers, etc | * [[Molecular Programming Project|MPP project page for Richard Murray]] - lists students, activities, papers, etc | ||
| Line 7: | Line 9: | ||
==== Classes and educational materials ==== | ==== Classes and educational materials ==== | ||
* [[CDS_101/110a,_Fall_2008|CDS 110a, Feedback Systems (Fall 2008)]] - This course provides an introduction to feedback systems and control theory. It includes biomolecular examples in lectures and homework. It is taken by advanced undergraduates and beginning graduate students. | * [[CDS_101/110a,_Fall_2008|CDS 110a, Feedback Systems (Fall 2008)]] - This course provides an introduction to feedback systems and control theory. It includes biomolecular examples in lectures and homework. It is taken by advanced undergraduates and beginning graduate students. | ||
* | * [http://www.cds.caltech.edu/~murray/amwiki/index.php/Biomolecular_Feedback_Systems Biomolecular_Feedback_Systems] - This set of notes is intended for researchers interested in the application of feedback and control to biomolecular systems. It is a draft manuscript for a book that I am considering writing with Domitilla Del Vecchio, a former student now at MIT. | ||
==== Undergraduate projects ==== | ==== Undergraduate projects ==== | ||
* 2008 MPP SURF: Fei Chen (Caltech Bi/EE), | * 2008 MPP SURF: Fei Chen (Caltech Bi/EE), Integral feedback controllers using in vitro transcriptional circuits | ||
* 2008 MPP SURF: Chris Sturk (Lund University), | ** Currently a Caltech student; planning to apply to PhD programs this year | ||
* 2009 MPP SURF: Arjun Ravikumar (Caltech BE), | * 2008 MPP SURF: Chris Sturk (Lund University), Tuning a synthetic in vitro oscillator using control-theoretic tools | ||
* | ** [http://www.cds.caltech.edu/~murray/papers/2010c_sfm10-cdc.html Conference paper] - work accepted to 2010 Conference on Decision and Control (CDC), to be held in December | ||
** Currently working on his undergraduate degree at Lund University in Sweden | |||
* 2009 MPP SURF: Arjun Ravikumar (Caltech BE), Construction of an environmental stimulus receptive DNA circuit in a cell-free transcription/translation system | |||
* [http://2010.igem.org/Team:Caltech 2010 Caltech iGEM team]: Lucas Hartsough (BE), Brian Ma (ME), Yuehan Huang (ChE), Alexandre Boulgakov (CS), Melissa Xu (BE), Paul Nguyen (BE) | |||
==== | ==== Participants ==== | ||
{| border=1 width=100% | {| border=1 width=100% class="wikitable" | ||
|- | |- | ||
| Student | | Student | ||
| Line 26: | Line 28: | ||
| MPP activity | | MPP activity | ||
| Current activity | | Current activity | ||
|- | |||
| Dionysios Barmpoutis, CNS PhD student | |||
| [[Image:Barmpoutis_Dionysios.jpg|100px]] | |||
| Crosstalk in networked systems | |||
| Continuing student, working on another project | |||
|- | |- | ||
| Elisa Franco, CDS PhD student | | Elisa Franco, CDS PhD student | ||
| | | [[Image:Franco_Elisa.jpg|100px]] | ||
| RNA-based ''in vitro'' transcriptional circuits | | RNA-based ''in vitro'' transcriptional circuits | ||
| Graduating in June 2011; looking for postdoctoral positions | | Graduating in June 2011; looking for postdoctoral positions | ||
|- | |||
| Jongmin Kim, BE postdoc | |||
| [[Image:Kim_Jongmin.jpg|100px]] | |||
| Biomolecular "wind tunnel" | |||
| Continuing postdoc (MPP) | |||
|- | |||
| Arjun Ravikumar, BE undergraduate | |||
| [[Image:Ravikumar_Arjun.jpg|100px]] | |||
| 2010 MPP SURF | |||
| Continuing student | |||
|- | |||
| Yuehan Huang, ChE undergraduate | |||
| [[Image:Huang_Yuehan.jpg|100px]] | |||
| 2010 SURF: iGEM | |||
| Continuing student | |||
|- | |||
| Lucas Hartsough, undergraduate | |||
| [[Image:Hartsough_Lucas.jpg|100px]] | |||
| 2010 SURF: iGEM | |||
| Continuing student | |||
|- | |||
| Melissa Xu, BE undergraduate | |||
| [[Image:Xu_Melissa.jpg|100px]] | |||
| 2010 SURF: iGEM | |||
| Continuing student | |||
|- | |||
| Paul Nguyen, BE undergraduate | |||
| [[Image:Nguyen_Paul.jpg|100px]] | |||
| 2010 SURF: iGEM | |||
| Continuing student | |||
|- | |||
| Alexandre (Sasha) Boulgakov, CS undergraduate | |||
| [[Image:Boulgakov_Alexandre.jpg|100px]] | |||
| 2010 SURF: iGEM | |||
| Continuing student | |||
|- | |||
| Brian Ma, ME undergraduate | |||
| [[Image:Ma_Brian.jpg|100px]] | |||
| 2010 SURF: iGEM | |||
| Continuing student | |||
|- | |||
| Fei Chen, Be/EE undergraduate | |||
| [[Image:Chen_Fei.jpg|100px]] | |||
| 2009 MPP SURF | |||
| Continuing student; working with Niles Pierce | |||
|- | |||
| Chris Sturk, visiting MPP SURF | |||
| [[Image:Sturk_Christopher.jpg|100px]] | |||
| 2009 MPP SURF | |||
| Continuing studies at Lund University (Sweden) | |||
|} | |} | ||
Latest revision as of 22:37, 18 September 2010
This page contains information for the 2010 review of the Molecular Programming Project. The information on this page reflects activities from July 2008 to September 2010.
Other sources of information:
- MPP project page for Richard Murray - lists students, activities, papers, etc
Education
Classes and educational materials
- CDS 110a, Feedback Systems (Fall 2008) - This course provides an introduction to feedback systems and control theory. It includes biomolecular examples in lectures and homework. It is taken by advanced undergraduates and beginning graduate students.
- Biomolecular_Feedback_Systems - This set of notes is intended for researchers interested in the application of feedback and control to biomolecular systems. It is a draft manuscript for a book that I am considering writing with Domitilla Del Vecchio, a former student now at MIT.
Undergraduate projects
- 2008 MPP SURF: Fei Chen (Caltech Bi/EE), Integral feedback controllers using in vitro transcriptional circuits
- Currently a Caltech student; planning to apply to PhD programs this year
- 2008 MPP SURF: Chris Sturk (Lund University), Tuning a synthetic in vitro oscillator using control-theoretic tools
- Conference paper - work accepted to 2010 Conference on Decision and Control (CDC), to be held in December
- Currently working on his undergraduate degree at Lund University in Sweden
- 2009 MPP SURF: Arjun Ravikumar (Caltech BE), Construction of an environmental stimulus receptive DNA circuit in a cell-free transcription/translation system
- 2010 Caltech iGEM team: Lucas Hartsough (BE), Brian Ma (ME), Yuehan Huang (ChE), Alexandre Boulgakov (CS), Melissa Xu (BE), Paul Nguyen (BE)
Participants
| Student | Photo | MPP activity | Current activity |
| Dionysios Barmpoutis, CNS PhD student | File:Barmpoutis Dionysios.jpg | Crosstalk in networked systems | Continuing student, working on another project |
| Elisa Franco, CDS PhD student | 
|
RNA-based in vitro transcriptional circuits | Graduating in June 2011; looking for postdoctoral positions |
| Jongmin Kim, BE postdoc | 
|
Biomolecular "wind tunnel" | Continuing postdoc (MPP) |
| Arjun Ravikumar, BE undergraduate | 
|
2010 MPP SURF | Continuing student |
| Yuehan Huang, ChE undergraduate | 
|
2010 SURF: iGEM | Continuing student |
| Lucas Hartsough, undergraduate | 
|
2010 SURF: iGEM | Continuing student |
| Melissa Xu, BE undergraduate | 
|
2010 SURF: iGEM | Continuing student |
| Paul Nguyen, BE undergraduate | 
|
2010 SURF: iGEM | Continuing student |
| Alexandre (Sasha) Boulgakov, CS undergraduate | 
|
2010 SURF: iGEM | Continuing student |
| Brian Ma, ME undergraduate | 
|
2010 SURF: iGEM | Continuing student |
| Fei Chen, Be/EE undergraduate | 
|
2009 MPP SURF | Continuing student; working with Niles Pierce |
| Chris Sturk, visiting MPP SURF | File:Sturk Christopher.jpg | 2009 MPP SURF | Continuing studies at Lund University (Sweden) |
