SURF alumni
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This page contains a list of the SURF students who have worked with me over the years. This list is not complete, so if you see a name that is missing, please let me know.
2024
2024 Summer Students
- Layla Adeli (BE)
- Lovisa Bjorn (Sweden)
- Lisardo Duran (PCC)
- Myia Gilmore (Western Wash. Univ.)
- Dylan Hakken (Northwestern)
- Max Janssen (Lawerence Univ.)
- Anna Kashchei (Ripon College)
- Christopher Lam (PCC)
- Trinity Lee (BE)
- Clarisa Torres (NW Vista College)
- Denys Vasyutyn (NYU)
- Olivia Wang (BE)
- Sheldon Yu (UC Irvine)
2023
- Kimia Hassibi (CS)
- Jack Myles (CS)
- Elna Svegborn (Sweden)
- Kenadi Weymire (CS)
- Phillipe Wiederkehr (Berkeley)
2022
- Anthony Chiang (WUSTL)
- Andy Dimnaku (Caltech CS)
- Trinity Lee (Caltech BE)
- Robert Hansen Jagrelius (Sweden)
- Aditi Seetharaman (Caltech BE)
- Olivia Wang (Harvard-Westlake)
- Alina Zhang (Caltech CS/Ch)
2021
- Victoria Chen (Caltech BE)
- Halle Holzbauer (Caltech BE)
- Joshua Ibrahim (U. Pennsylvania)
- Hannah Lim (Cornell)
- Pranay Satya (Caltech BE)
- Christian Stromberger (Caltech CS)
- Bridget Yang (Caltech BE)
2020
- Giovanna Amorim (U. Maryland)
- Tom Andersson (Lund U.)
- Albert Anis (Lund U.) - Synthetic Cell
- Peter Birmingham (U. South Carolina) - Synthetic Cell
- Victoria Chen (Caltech BE)
- Berlin Del Aguila (Humbolt State)
- Ayush Blindish (India) - Synthetic Cell
- Agrima Deedwania (India) - Synthetic Cell
- Bruno Freeman (Caltech CS/Ma)
- Joe Peterson (U. Minnesota)
- Ankita Roychoudhury (Caltech BE) - Synthetic Cell
- Nazmus Saadat (Oxford) - Synthetic Cell
- Jere Susas (Cal State Northridge) - Synthetic Cell
- Katherine Pan (BE)
2019
- Ann Caplin (Caltech)
- Victoria Chen (Caltech)
- Ludvig Doeser (Sweden)
- Leah Keiser (Northwestern)
- Filip Kronström (Sweden)
- Lillian Parr (William and Mary)
- James Walker (Caltech)
2018
- Emanuel Flores (Mexico) - Characterization of the lifetime of bacterial synthetic circuits
- Steve Guo (Caltech) - Contract-based design of control snystems
- Elin Larsson (Sweden) - Engineering metabolic cross-feeding relationships for robust microbial consortia
- Leah Keiser (Northwestern) - Designing a module for cell death
- Filip Claesson (Sweden) - Design and implementation of a controller to advance in multi-lane traffic similar to human behavior using control improvisation
- Sanjana Kulkarni (Caltech) - Building event recorder circuits in Bacillus subtilis that record sequence and magnitude of cell death by integrating DNA released by lysed Escherichia coli
- John Lee (Harvey Mudd, VURP) - River mapping with autonomous surface vehicles for flood hazard monitoring
- Harman Mehta (India) - Modeling the effect of intracellular signaling mechanisms on population dynamic behaviors in the context of paradoxical signaling
- Sannat Mengi (India) - Resource usage in TX-TL
- Rebecka Winqvist (Sweden) - Test design based on model mismatch for controlled systems
2017
- Swati Agrawal (IIT Delhi) - Synthetic modules for control of bacterial growth
- Rijad Alisic (Sweden) - Robust Synthesis from Temporal Logic Specifications
- Joy Doong (UC Davis) - Length and time scales of cell-cell signaling circuits in agar
- Miroslav Gasparek (United Kingdom) - Mathematical and computational modeling of simple artificial cell and development of general framework for rapid implementation of modularization of its subsystems
- Malin Jonsson (Sweden) - Engineering Communication Circuits for Synthetic Cells
- Kyle Martin - Toward a pH Sensor in Synthetic Circuit Design: Utilizing Acid Resistance Pathways in Enteric Bacteria for Novel Synthetic Gene Circuits
- Hubert Menou (France) - Temporal Logic Control with Integrated Experiment Design
2016
- Andrew Montequin - dCas9-Mediated Transcriptional Regulation in TX-TL
- Alex White - Functionalization of TX-TL Systems for Paper-Based Biosensor Arrays
2015
- Enrique Amaya - Rapid Prototyping of Moderate Complexity Biomolecular Circuits: Bistable Switch
- Divyansh Apurva - Designing Biomolecular Temperature Sensors
- Rafsan Chowdhury - Machine-readable protocols and rapid2 prototyping for synthetic biology research
- Nuno Duarte - Optimal Trajectory Generation under Environmental Uncertainties using Signal Temporal Logic Specifications
- Cody Dunn - Development of Criteria for the Analysis of Bimodal Distributions in Stochastic Biochemical Reaction Networks
- Charlie Erwall - Formal synthesis of switching protocols for estimation and control of aircraft electric power systems
- Marcus Greiff - Machine-readable protocols and rapid-prototyping for synthetic biology research: Implementation of a liquid handling robot
- Riashat Islam - Improved State Estimation for a Resilient Spacecraft Executive
- Sandra Liu - Integration of Behavioral Commands for Improved State Estimation and Control of Pioneer 3-DX for a Resilient Spacecraft
- Xianglin (Flora) Meng - Finding stationary solutions to the chemical master equation by gluing graphs at one or two vertices
- Phuc (Sam) Nguyen - Design Space Exploration of the Violacein Pathway in Escherichia coli Based Transcription Translation Cell-Free System (TX-TL)
- Anushka Rau - Estimating parameters of the TX-TL system to model a genetic bistable switch
- Yuening Zhang - Platform-Based Design for Robotics Applications
2014
- Monique Alkiewicz (iGEM), Implementation of Non-Endogenous Bacterial Quorum Sensing Systems in E. coli
- Anthony Chen (iGEM), Implementation of Non-Endogenous Bacterial Quorum Sensing Systems in E. coli
- Mattias Falt, Invariant Refinement for Receding Horizon Temporal Logic Planning
- Anton Frisk, Rapid prototyping of moderate complexity biomolecular circuits
- Joaquin Gabaldon, Symbolic Verification of Nonlinear Hybrid Systems using Theorem Provers
- Galen Gao (iGEM), Implementation of Non-Endogenous Bacterial Quorum Sensing Systems in E. coli
- Andrew Hou (iGEM), Implementation of Non-Endogenous Bacterial Quorum Sensing Systems in E. coli
- Joon Sik (David) Kim, Invariant Refinement for Receding Horizon Temporal Logic Planning
- Bianca Lepe (iGEM), Implementation of Non-Endogenous Bacterial Quorum Sensing Systems in E. coli
- Pulkit Malik, Rapid prototyping of moderate complexity biomolecular circuits
- Robert Mattila, Improved methods of discretization for temporal logic planning
- Linnea Persson, Switching control synthesis in the presence of uncertainty and general loads for an aircraft electric power system testbed
- Rohit Satija, Fabricating a Toolbox of RNA Thermometers
- Samriddhi Sharma, Symbolic Verification of Nonlinear Hybrid Systems using Theorem Provers
- Ben Wu, Applying Formal Methods to Improve Automated Security Systems
- Yuanyuan (Tina) Xu (iGEM), Implementation of Non-Endogenous Bacterial Quorum Sensing Systems in E. coli
- Tiffany Zhou, Rapid prototyping of moderate complexity biomolecular circuits
2013
- James Bern, Robot Motion Planning with Complex Tasks
- Mattias Falt (LTH), The role of delays in biological systems
- Aurelija Grigonyte (UCL), Characterizing gene expression for different extracts
- Monica Li, Investigating physical methods of protecting linear DNA fragments in cell free expression systems
- Oscar Mickelin (KTH), Synthesis of correct-by-construction control protocols for air management systems of aircraft
- Andrew Ng (WUSTL), Understanding and Quantifying the Effect of Compositional Context on Biocircuit Performance
- Juan Quijano (UANL), Synthetic logic circuits using RNA aptamers
- Rohit Sharma (IIT Dehli), Synthetic biological circuit design implementing protein degradation in-vitro
- Chris Zheng, Experiments with dynamic obstacles and correct-by-construction controllers
- Tiffany Zhou, The costs and benefits of various designs of biochemical 'decision engines'
2012
- Julia Brown (iGEM) - Isolation of Organisms to Degrade Biopolymers
- Giulia Giordano (Udine) - Biomolecular Rate–Regulator Circuits
- Alex Jose - On-the-Fly Task-Level Plan Correction for Planar Mobile Robots in Unknown Environments
- Shaunak Kar (IITG) - Regulation of an In Vitro Transcriptional Network with Target Molecules: A Modular Approach
- Ishan Khetarpal - Analysis and Design of Novel In Vitro Bistable Toggle Switches
- Kathryn Knister (iGEM) - Animated Bacteria and Biofuel Synthesis
- Daisy Lin (iGEM) - Increasing Ethanol Yields by Integrating Proteorhodopsin in Bacterial ATP Production Pathways
- Patrik Lundin (Lund) - Transcriptional Switches on a Biological Breadboard
- Paulo De Souza Motta (FGV, Brazil) - Gene Circuit Interference in Multiple Plasmid Layouts
- Adam Nilsson (Lund) - Diffeomorphism Based Motion Planning for Bootstrapping Vehicles and Robots
- R. Edward Pursifull (iGEM) - Engineering Proteorhodopsin into E. coli to increase Ethanol Production
- Chenxi Qiu (iGEM) - Maximizing Alcohol Production Using Ndh/Nuo Knockouts and Proteorhodopsin in E. coli
- Giulia Ripellino (KTH) - Evolution and Sporulation of Bacillus subtilis in the Presence of Antibiotics
- Robert Rogersten (KTH) - Aircraft Electric Power System Modeling
- Nicholas Spooner (Cambridge) - Evaluation and Benchmarking for Robot Motion Planning Problems Using TuLiP
- Ashley Su (CSULA; iGEM) - Engineering Escherichia coli to Animate in Response to Light
- Huey-Ru (Debra) Tsai (iGEM) - Metabolic Engineering and Construction of Expression Plasmids in Zymomonas mobilis
- Vinayak Viswanadham (UC Berkeley) - Understanding Feedback in Bacterial Toxin-Antitoxin Systems: An In Vitro Approach
2011
- Julia Brown (iGEM) - Bioremediation of Endocrine Disruptors: Isolation of an Endocrine-Disruptor-Degrading Bacterium
- Arjun Chandrasekhar - Simulac: A Stochastic Simulator for Modeling Biomolecular Circuits
- Puikei Cheng (iGEM) - Using E. coli to Bioremediate Endocrine Disrupting Chemicals
- Magnus Håkansson - Bootstrapping Robotic Systems: Implementation and Analysis
- Samuel Jones (Solar Decathlon) - Implementation of Home Planning and Automation Software for Solar Decathlon 2011
- Yuchen Lin - Simulation Interface for Receding Horizon Temporal Logic Planning
- Ishan Khetarpal - Design and Analysis of an in vitro Exact Adapter
- Paul Nguyen - Programmable Genetic Regulation by sRNA-mRNA Hybridization
- Petter Nilsson - State Space Partitioning Algorithm in TuLiP
- Keshav Sapatnekar - Design and Modeling of an Autoinhibiting Biomolecular Circuit Incorporating Scaffolding
- Amanda Shelton (iGEM) - Bioremediation of Endocrine Disrupting Compounds Using the Synthetic Biology BioBrick Standard
- Ka-Chuan Suen (Solar Decathlon) - Gesture Based Interface for Solar Decathlon House
- Nicole Thadani (iGEM) - Bioremediation of Endocrine Disruptors From Water Using Genetically Modified Escherichia coli
- Stephanie Tsuei - Implementation of a Distributed Camera Control Protocol
2010
- Alexandre Boulgakov - iGEM
- Arjun Ravikumar - Construction of an environmental stimulus receptive DNA circuit in a cell-free transcription/translation system
- Brian Ma - iGEM
- Lucas Hartsough - iGEM
- Melissa Xu - iGEM
- Oskar Hjartquist (LTH) - Origins of uncertainty in building synthetic genetic circuits
- Yuehan Huang - iGEM
2009
- Fei Chen (Caltech Bi/EE)
- Chris Sturk (Lund)
2008
- Mariette Annergren (KTH)
- Bjorn Heinbokel
- Karl Murray (KTH)
- Noele Norris (Caltech, EE) - Planning Under Sensing Uncertainty for a Mobile Autonomous Robot
- Ben Prindle (Caltech, ChE)
- Manuel Segura
- Stefan Skoog (Lund University)
- Glenn Wagner (Caltech, ME)
- Kevin Welch
2007
- Humberto Bento Ayres Pereira (U. Porto)
- Magnus Linderoth
- Christopher J. Schantz (Caltech)
- Kristian Soltesz (Lund) - Nonlinear Lateral Control Strategy for Nonholonomic Vehicles
2006
- Jessica N. Austin [Gonzalez] (Caltech)
- Morlan Liu (College of the Canyons)
- Joshua J. Feingold (Caltech)
- Bernardo Maciel (Portugal) - Attention and Awareness for Autonomous Driving
- Humberto Bento Ayres Pereira (Portugal)
- David M. Rosen (Caltech, Ma)
- Jing Shen (Caltech)
- Jose Torres (USC)
- Johan Ugander (Lund)
2005
- Ludo Antonov - Riegl LADAR Linux driver and Sensor Synchronization via Real-Time Kernel Extensions
- Tully Foote - Adrive: Autonomous Driving Software
- Jeremy Gillula - Data Fusion from Multiple Sensors: Real-Time Mapping on an Unmanned Ground Vehicle
- Marie Göransson (Lund) - Measuring Sensor Health in DARPA Grand Challenge
- Rob Grogan - Automotive Failures and Solutions for Autonomous Vehicle Development
- George Hines - Environmental Considerations in a Mobile Computing Facility
- Erik Johannesson (Lund) - Integrated Stereovision for an Autonomous Ground Vehicle
- Tony Kelman - Dynamical Modeling of an Autonomous Ground Vehicle
- Jeremy Leibs - Improvements in State Estimation
- Gustav Lindstrom (Lund) - Road following based on video and LADAR data
- Laura Lindzey - Trajectory Following in Off-Road Desert Terrain
- Lisa Nystrom (Lund) - Online terrain classification for the DARPA Grand Challenge
- Tami Reyda - Development of Gimbaled Sensor Platform and Gimbal Pointing Algorithm
- Dave Rosen - Hierarchical Path Planning in Autonomous Ground Vehicles
- Alex Stewart - Development of a Supervisory Control Architecture for Deterministic System Control of Alice
- Lusann Yang (Princeton) -
- Jason Yosinksi - Terrain Sensing through Analysis of Vehicle State Variables
2004
- Lyle J. Chamberlain
- Meghan R. Crowley
- Jeremy H. Gillula
- Haomiao Huang
- Andrew N. Kwok
- Alexander J. Sutherland
- Jin Xiong
- Henrik Kjellander (Lund)
- Brian Beck (Princeton)
- Jon Gibbs (MIT)
- Hans-Kristian Knudson (Lund)
- Roger Hsiao (UIUC),
- John McNamara
- Randall Ward
2003
- Claire Walton
- Burak Cendek
- Cesar Del Solar
- Michael Yeh
- Denny Chao
2002
- Lyle Chamberlain
- Megha Watagalu
- Japeck Tang
1995
- Gary Fay
1993
- Henry Choi
- Asif Khalak
- Steven Rhee
1992
- Nicky Impert - investigating shape memory alloys for use in biomedical equipment
- Matt Tucker