| 9:00a
|
Workshop goals and introduction
|
| 9:15a
|
Review of basic concepts in biology
- Central dogma
- Simple ODE models for biological processes
|
| 10:15a
|
Break
|
| 10:30a
|
Analysis techniques
- Use simple examples
- Repression effects on noise, response time
- Savageaumoics (repression versus activation)
|
| 11:30a
|
Examples from biology
- More complicated system(s), with as much as can be analyzed
- Eg, Chemotaxis, necessity of integral feedback
|
| 12:30p
|
Lunch
|
| 1:30p
|
Overview of biological circuit design
- Synthetic biology
- Molecular programming
|
| 2:15p
|
Robustness to uncertainty
- Simple examples, without too much implementation detail
|
| 3:00p
|
Design of dynamics
|
| 3:30p
|
break
|
| 3:45p
|
Modularity
|
| 4:30p
|
Implementation
- What can you actually do (limits of biomodularity, things that are easy to tune, etc)
- Examples of devices: switches, oscillators (with "experimental" details) - how to build things
- What can you measure (single cell microscopy, bulk measurements), inputs (IPTG, aTC, etc)
- iGEM presentation?
|
| 5:15p
|
Future challenges (discussion)
|
| 6:00p
|
Adjourn
|
