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List of results

• Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli  + (HM17-biorxiv)
• Design of a genetic layered feedback controller in synthetic biological circuitry  + (HM19-seed)
• Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks  + (HM22-NatureComms)
• A Method for Cost-Effective and Rapid Characterization of Genetic Parts  + (JBM+21-jove)
• Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA  + (LMM19-biorxiv)
• Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions  + (LNM+20-ime)
• Constrained risk-averse Markov decision processes  + (MA+21-aaai)
• Control of bacterial population density with population feedback and molecular sequestration  + (MHGM18-wqbio)
• Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation  + (MM19-qbio)
• A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression  + (MMEL19-abb)

• Control of density and composition in an engineered two-member bacterial community  + (MPM19-seed)

• From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology  + (PISM22-IWBDA)
• An automated model reduction tool to guide the design and analysis of synthetic biological circuits  + (PM19-iwbda)
• A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression  + (PM21-wqbio)
• Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models  + (PM22-IJRNC)
• Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop  + (PMS20-ACSsynbio)
• Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline  + (PRPM22-biorxiv)
• Time-Optimal Navigation in Uncertain Environments with High-Level Specifications  + (RAMA21-cdc)
• Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations  + (RCMF21-acc)
• Proof of concept continuous event logging in living cells  + (SM19-seed)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (SPHM19-biorxiv)