Difference between revisions of "SURF 2021: Modeling tools for design and analysis of synthetic biological circuits"

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'''[[SURF 2020|2020 SURF]] project description'''
'''[[SURF 2020|SURF 2020]] project description'''
* Mentor: Richard Murray
* Mentor: Richard Murray
* Co-mentor: Ayush Pandey
* Co-mentor: Ayush Pandey




[[File:SynBioModelingPipeline.jpg]]


Research directions for a SURF project include:
Research directions for the SURF project include:
* Modeling of cell-free systems
* System identification by parts, global sensitivity analysis, model decomposition, reduced models
* Using extract and tx-tl data
*


We are interested in both theoretical and computational directions for this project.  
We are interested in both theoretical and computational directions for this project.  
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'''References:'''
'''References:'''
# Tuza, Zoltan A., et al. "An in silico modeling toolbox for rapid prototyping of circuits in a biomolecular “breadboard” system." 52nd IEEE Conference on Decision and Control. IEEE, 2013. [[An In Silico Modeling Toolbox for Rapid Prototyping of Circuits in a Biomolecular “Breadboard” System| Link]]
# Bioscrape
# BioCRNpyler
# Sub-SBML
#
#

Revision as of 06:06, 11 December 2019

SURF 2020 project description

  • Mentor: Richard Murray
  • Co-mentor: Ayush Pandey


SynBioModelingPipeline.jpg

Research directions for the SURF project include:

  • Modeling of cell-free systems
  • System identification by parts, global sensitivity analysis, model decomposition, reduced models
  • Using extract and tx-tl data

We are interested in both theoretical and computational directions for this project.


References:

  1. Tuza, Zoltan A., et al. "An in silico modeling toolbox for rapid prototyping of circuits in a biomolecular “breadboard” system." 52nd IEEE Conference on Decision and Control. IEEE, 2013. Link
  2. Bioscrape
  3. BioCRNpyler
  4. Sub-SBML