SURF 2021: Modeling tools for design and analysis of synthetic biological circuits: Difference between revisions
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'''[[SURF 2020|2020 | '''[[SURF 2020|SURF 2020]] project description''' | ||
* Mentor: Richard Murray | * Mentor: Richard Murray | ||
* Co-mentor: Ayush Pandey | * Co-mentor: Ayush Pandey | ||
[[File:SynBioModelingPipeline.jpg]] | |||
Research directions for | Research directions for the SURF project include: | ||
* Modeling of cell-free systems | |||
* System identification by parts, global sensitivity analysis, model decomposition, reduced models | |||
* Using extract and tx-tl data | |||
* | |||
We are interested in both theoretical and computational directions for this project. | We are interested in both theoretical and computational directions for this project. | ||
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'''References:''' | '''References:''' | ||
# Tuza, Zoltan A., et al. "An in silico modeling toolbox for rapid prototyping of circuits in a biomolecular “breadboard” system." 52nd IEEE Conference on Decision and Control. IEEE, 2013. [[An In Silico Modeling Toolbox for Rapid Prototyping of Circuits in a Biomolecular “Breadboard” System| Link]] | |||
# Bioscrape | |||
# BioCRNpyler | |||
# Sub-SBML | |||
# | # | ||
Revision as of 06:06, 11 December 2019
SURF 2020 project description
- Mentor: Richard Murray
- Co-mentor: Ayush Pandey
Research directions for the SURF project include:
- Modeling of cell-free systems
- System identification by parts, global sensitivity analysis, model decomposition, reduced models
- Using extract and tx-tl data
We are interested in both theoretical and computational directions for this project.
References:
- Tuza, Zoltan A., et al. "An in silico modeling toolbox for rapid prototyping of circuits in a biomolecular “breadboard” system." 52nd IEEE Conference on Decision and Control. IEEE, 2013. Link
- Bioscrape
- BioCRNpyler
- Sub-SBML
