Difference between revisions of "SURF 2015: Design space exploration of the violacein pathway in TX-TL"

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== Design space exploration of the violacein pathway in TX-TL ==
===Mentor: Richard Murray===
=Mentor: Richard Murray=
===Co-mentor: Shaobin Guo and Yong Wu===
=Co-mentor: Shaobin Guo and Yong Wu=


Violacein is a water-insoluble violet pigment that naturally exists in a few bacteria (Jiang, 2010 & Pantanella, 2007). Violacein has the potential applications in antibacterial, anti-trypanocidal, anti-ulcerogenic, and anticancer drugs (Balibar, 2006). The pathway to produce violacein from tryptophan consists of five enzymes vioA-E (Hoshino, 2011).  The pathway is NADPH dependent and consumes oxygen. The various enzymes involved in the pathway could also lead to the production of a few colorful byproducts, which might interfere with fluorescence signals when plate reader is used. The goal of the project is to characterize the violacein pathway using cell-free transcription and translational (TX-TL) system. Student will take advantage of the TX-TL system to explore ways to improve violacein production.  
Violacein is a water-insoluble violet pigment that naturally exists in a few bacteria (Jiang, 2010 & Pantanella, 2007). Violacein has the potential applications in antibacterial, anti-trypanocidal, anti-ulcerogenic, and anticancer drugs (Balibar, 2006). The pathway to produce violacein from tryptophan consists of five enzymes vioA-E (Hoshino, 2011).  The pathway is NADPH dependent and consumes oxygen. The various enzymes involved in the pathway could also lead to the production of a few colorful byproducts, which might interfere with fluorescence signals when plate reader is used. The goal of the project is to characterize the violacein pathway using cell-free transcription and translational (TX-TL) system. Student will take advantage of the TX-TL system to explore ways to improve violacein production.  

Revision as of 20:14, 19 December 2014

Mentor: Richard Murray

Co-mentor: Shaobin Guo and Yong Wu

Violacein is a water-insoluble violet pigment that naturally exists in a few bacteria (Jiang, 2010 & Pantanella, 2007). Violacein has the potential applications in antibacterial, anti-trypanocidal, anti-ulcerogenic, and anticancer drugs (Balibar, 2006). The pathway to produce violacein from tryptophan consists of five enzymes vioA-E (Hoshino, 2011). The pathway is NADPH dependent and consumes oxygen. The various enzymes involved in the pathway could also lead to the production of a few colorful byproducts, which might interfere with fluorescence signals when plate reader is used. The goal of the project is to characterize the violacein pathway using cell-free transcription and translational (TX-TL) system. Student will take advantage of the TX-TL system to explore ways to improve violacein production.

References:

Balibar, C. J. and C. T. Walsh (2006). "In Vitro Biosynthesis of Violacein from l-Tryptophan by the Enzymes VioA−E from Chromobacterium violaceum." Biochemistry 45(51): 15444-15457. [1]

Hoshino, T. (2011). "Violacein and related tryptophan metabolites produced by Chromobacterium violaceum: biosynthetic mechanism and pathway for construction of violacein core." Applied Microbiology and Biotechnology 91(6):1463-1475.

Jiang, P.-x., et al. (2010). "Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts." Applied Microbiology and Biotechnology 86(4): 1077-1088. [2]

Pantanella, F., et al. (2007). "Violacein and biofilm production in Janthinobacterium lividum." Journal of Applied Microbiology 102(4): 992-999. http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2672.2006.03155.x/full


Sun, Z. Z., et al. (2013). "Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology." (79): e50762. http://www.jove.com/video/50762/protocols-for-implementing-an-escherichia-coli-based-tx-tl-cell-free

Sun, Z. Z., et al. (2013). "Linear DNA for Rapid Prototyping of Synthetic Biological Circuits in an Escherichia coli Based TX-TL Cell-Free System." ACS Synthetic Biology. http://pubs.acs.org/doi/abs/10.1021/sb400131a