Flow cytometry software

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This page contains notes on flow cytometry software that I found while trying to analyze some data from UCSF. Mainly for internal usage, but figured I would put it online in case others needed it.

Commercial packages

FlowJo

This is a very well-designed package that has a lot of analytical tools built in. Simple things it can do:

  • Load lots of different data sets and choose various subsets of the data for analysis

Things that don't look so easy:

  • Scripting or other more complicated programming functions

The software costs about $1500 for a node-locked license or key-based license.

Open source packages

Toolboxes

MATLAB

Python

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