Property:Funding

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R
Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli +
Biomolecular Circuits for Rapid Detection and Response to Environmental Events  +
E
Engineering pulsatile communication in bacterial consortia +
Biomolecular Circuits for Rapid Detection and Response to Environmental Events  +
H
Hiding variables when decomposing specifications into GR(1) contracts +
The TerraSwarm Research Center  +, Temporal Logic Specifications for Control System Design in Automotive Systems  +
D
Decomposing GR(1) Games with Singleton Liveness Guarantees for Efficient Synthesis +
The TerraSwarm Research Center  +
T
The Effect of Compositional Context on Synthetic Gene Networks +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
P
Population regulation in microbial consortia using dual feedback control +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
Q
Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +, Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
A
AFOSR BRI, DARPA BioCon +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +, Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
S
SRC TerraSwarm, DENSO CPM +
The TerraSwarm Research Center  +, Temporal Logic Specifications for Control System Design in Automotive Systems  +
P
Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States +
The TerraSwarm Research Center  +
L
Learning-Based Abstractions for Nonlinear Constraint Solving +
The TerraSwarm Research Center  +
B
Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
R
Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
C
Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
L
Layering assume-guarantee contracts for hierarchical system design +
The TerraSwarm Research Center  +
S
System-level studies of a cell-free transcription-translation platform for metabolic engineering +
Programmable Molecular Technology Initiative  +
A
A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
C
Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology +
Biomolecular Circuits for Rapid Detection and Response to Environmental Events  +, Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
L
Length and time scales of cell-cell signaling circuits in agar +
Genetic Circuits for Multi-Cellular Machines  +
H
Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
C
Control of bacterial population density with population feedback and molecular sequestration +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
P
Proof of concept continuous event logging in living cells +
Field-Programmable, Recombinase-Based Biomolecular Circuits  +
M
Modeling Dynamic Transcriptional Circuits with CRISPRi +
Establishing microfluidic cell-free systems for the rapid prototyping of synthetic genetic networks  +
S
Single day construction of multi-gene circuits with 3G assembly +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
L
Long-distance communication in synthetic bacterial consortia through active signal propagation +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
R
Role of interaction network topology in controlling microbial population in consortia +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
V
Voluntary lane-change policy synthesis with reactive control improvisation +
VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
O
Optimal Experiment Design and Leveraging Competition for Shared Resources in Cell-free Extracts +
Molecular Programming Architectures, Abstractions, Algorithms, and Applications  +
On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3 +
Cell-Free Expression of Membrane Proteins with Applications to Drug Discovery  +
T
Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams +
Safety-Critical Autonomy and Verification for Space Missions  +
Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations +
Safety-Critical Autonomy and Verification for Space Missions  +
C
Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability +
Rapid, Reliable and Repeatable Platforms for Cell-Free Prototyping  +
A
A modal interface contract theory for guarded input/output automata with an application in traffic system design +
Temporal Logic Specifications for Control System Design in Automotive Systems  +
R
Risk-aware motion planning for automated vehicle among human-driven cars +
VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
I
Inverse Abstraction of Neural Networks Using Symbolic Interpolation +
VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
M
Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
C
Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +, Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
E
Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor +
Biomolecular Circuits for Rapid Detection and Response to Environmental Events  +
F
Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape +
Rules of Composition in Synthetic Biology Across Scales of Complexity: Theory and Tools  +
A
Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation +
Field-Programmable, Recombinase-Based Biomolecular Circuits  +
Q
Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
T
Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli +
Field-Programmable, Recombinase-Based Biomolecular Circuits  +
A
A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression +
Engineering Durable Cell-Free Biological Capabilities for Advanced Sensing and Prototyping  +
C
Control of density and composition in an engineered two-member bacterial community +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
A
An automated model reduction tool to guide the design and analysis of synthetic biological circuits +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
D
Design of a genetic layered feedback controller in synthetic biological circuitry +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
B
Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
C
Contracts of Reactivity +
Temporal Logic Specifications for Control System Design in Automotive Systems  +, VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
A
Analysis of primitive genetic interactions for the design of a genetic signal differentiator +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
T
Towards Assume-Guarantee Profiles for Autonomous Vehicles +
Temporal Logic Specifications for Control System Design in Automotive Systems  +, VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
C
Counter-example Guided Learning of Bounds on Environment Behavior +
Assurance for Learning Enabled Systems  +
M
Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +, Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  +
T
Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
A
A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
L
Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
I
Invariant Sets for Integrators and Quadrotor Obstacle Avoidance +
Formal Methods for V&V and T&E of Autonomous Systems  +
F
Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions +
Formal Methods for V&V and T&E of Autonomous Systems  +
B
BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +, Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  +
A
A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
Analysis of Circuits for Dosage Control in Microbial Populations +
Fundamental Biological Factors Underlying Human Performance: From Molecular Diagnostics and Detection to Behavior and Systems Biology  +
F
Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture +
Temporal Logic Specifications for Control System Design in Automotive Systems  +, Safety-Critical Cyber-Physical Systems: From Validation & Verification to Test & Evaluation  +
L
Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications +
Formal Methods for V&V and T&E of Autonomous Systems  +
S
Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems +
Formal Methods for V&V and T&E of Autonomous Systems  +
L
Learning pose estimation for UAV autonomous navigation and landing using visual-inertial sensor data +
VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
S
Synthetic mammalian signaling circuits for robust cell population control +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
R
Reactive motion planning with probabilistic safety guarantees +
Assurance for Learning Enabled Systems  +, Safety-Critical Cyber-Physical Systems: From Validation & Verification to Test & Evaluation  +
Rules of the Road: Safety and Liveness Guarantees for Autonomous Vehicles +
VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  +
A
A MATLAB toolbox for modeling genetic circuits in cell-free systems +
Rapid, Reliable and Repeatable Platforms for Cell-Free Prototyping  +
T
Time-Optimal Navigation in Uncertain Environments with High-Level Specifications +
Safety-Critical Cyber-Physical Systems: From Validation & Verification to Test & Evaluation  +
L
Limits of probabilistic safety guarantees when considering human uncertainty +
GA Autonomy  +
A
A Method for Cost-Effective and Rapid Characterization of Genetic Parts +
Engineering Durable Cell-Free Biological Capabilities for Advanced Sensing and Prototyping  +
S
Systems Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain Axis +
GMB MURI  +
G
Guidelines for Designing the Antithetic Feedback Motif +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
D
Data-driven network models for genetic circuits from time-series data with incomplete measurements +
Theory-Based Engineering of Biomolecular Circuits in Living Cells  +
R
Risk-Averse Decision Making Under Uncertainty +
Formal Methods for V&V and T&E of Autonomous Systems  +
Robustness Guarantees for Structured Model Reduction of Dynamical Systems +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +, Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  +
Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models +
Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  +
T
Towards Better Test Coverage: Merging Unit Tests for Autonomous Systems +
Formal Methods for V&V and T&E of Autonomous Systems  +
F
From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology +
Rules of Composition in Synthetic Biology Across Scales of Complexity: Theory and Tools  +
L
Layered Feedback Control Overcomes Performance Trade-Off in Synthetic Biomolecular Networks +
Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  +
C
Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA +
Enabling Technologies for Cell-Silicon Interfacing  +
M
Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates +
An Open Synthetic Biology Toolkit for Engineering Reliable Genetic Circuits in Microbes in Soil  +
S
Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows +
Formal Methods for V&V and T&E of Autonomous Systems  +
E
Evaluation Metrics for Object Detection for Autonomous Systems +
Formal Methods for V&V and T&E of Autonomous Systems  +
C
Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline +
Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  +, Rules of Composition in Synthetic Biology Across Scales of Complexity: Theory and Tools  +
M
Minimally Constrained Testing for Autonomy with Temporal Logic Specifications +
Formal Methods for V&V and T&E of Autonomous Systems  +
R
Reasoning over Test Specifications using Assume-Guarantee Contracts +
Formal Methods for V&V and T&E of Autonomous Systems  +
E
Evaluation Metrics of Object Detection for Quantitative System-Level Analysis of Autonomous Systems +
Formal Methods for V&V and T&E of Autonomous Systems  +
B
Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications +
Formal Methods for V&V and T&E of Autonomous Systems  +
A
A 65nm CMOS Living-Cell Dynamic Fluorescence Sensor with 1.05fA Sensitivity at 600/700nm Wavelengths +
Enabling Technologies for Cell-Silicon Interfacing  +
M
Metabolic perturbations to an E. coli-based cell-free system reveal a trade-off between transcription and translation +
Center for Harnessing Microbiota from Military Environments (CHARMME)  +
P
Pacti: Scaling Assume-Guarantee Reasoning for System Analysis and Design +
Rules of Composition in Synthetic Biology Across Scales of Complexity: Theory and Tools  +, Layered T&E for Safety-Critical Autonomous Systems  +
D
Development of cell-free transcription-translation systems in three soil Pseudomonads +
Engineering Durable Cell-Free Biological Capabilities for Advanced Sensing and Prototyping  +
A
A chemical reaction network model of PURE +
Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  +, Rules of Composition in Synthetic Biology Across Scales of Complexity: Theory and Tools  +
E
Engineering the soil bacterium Pseudomonas synxantha 2-79 into a ratiometric bioreporter for phosphorus limitation +
Engineering Reliable Genetic Circuits for Characterization and Remediation of Soil Ecologies  +
A
Addressable and adaptable intercellular communication via DNA messaging +
Field-Programmable, Recombinase-Based Biomolecular Circuits  +
I
Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli +
Field-Programmable, Recombinase-Based Biomolecular Circuits  +
E
Efficient local validation of partially ordered models via Baysian directed sampling +
Layered T&E for Safety-Critical Autonomous Systems  +
O
Optimizing protein expression in the One-Pot PURE system: Insights into reaction composition and translation efficiency +
Deciphering the Rules of Nucleus Architecture with Synthetic Cells and Organelles  +
A
A Field-Deployable Arsenic Sensor Integrating Bacillus Megaterium with CMOS Technology +
Enabling Technologies for Cell-Silicon Interfacing  +
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