CDS 270-4, 2010: Bio-Control - Revision history

Elisa: /* Course Schedule */

2010-05-23T19:22:09Z

Course Schedule

← Older revision		Revision as of 19:22, 23 May 2010
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	\|-		\|-
	\| 21 May (F)		\| 21 May (F)
	\| Chemotaxis		\| Chemotaxis: robust perfect adaptation [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week8-2.pdf Slides]
	\|		\|
	\|		\|
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	\| colspan=4 \| ''' Modularity in control theory and biology '''		\| colspan=4 \| ''' Modularity in control theory and biology '''
	\|- valign=top		\|- valign=top
	\| 25 May (T)		\| 26 May (W)
	\| Time-scale separation principle and dynamical systems approaches to modularity		\| Time-scale separation principle and dynamical systems approaches to modularity
	\|		\|

Elisa: /* Course Schedule */

2010-05-18T20:03:38Z

Course Schedule

← Older revision		Revision as of 20:03, 18 May 2010
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	\| 18 May (T)		\| 18 May (T)
	\| Introduction: robustness in control theory vs biology [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week8-1.pdf Slides]		\| Introduction: robustness in control theory vs biology [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week8-1.pdf Slides]
			\| [http://www.cell.com/retrieve/pii/S0092867404008402 Review on robustness of cellular functions], [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC549435/ Heat shock response in E. coli], [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/18/2415 Model checking for robust biological networks]
	\|NA		\|NA
	\|-		\|-

Elisa: /* Course Schedule */

2010-05-18T19:59:33Z

Course Schedule

← Older revision		Revision as of 19:59, 18 May 2010
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	\| 14 May (F)		\| 14 May (F)
	\| RNA-based control and ultrasensitivity [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week7-2.pdf Slides]		\| RNA-based control and ultrasensitivity [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week7-2.pdf Slides]
	\|		\|[http://www.nature.com/nbt/journal/v24/n5/full/nbt1208.html RNA synthetic biology, review], [http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0050229 sRNA-based regulation], [http://www.nature.com/msb/journal/v5/n1/full/msb200930.html Ultrasensitive response in protein interactions]
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	\|-		\|-

Elisa: /* Course Schedule */

2010-05-18T19:56:52Z

Course Schedule

← Older revision		Revision as of 19:56, 18 May 2010
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	\|-		\|-
	\| align=center rowspan=3 \| 3		\| align=center rowspan=3 \| 3
	\| colspan=4 \| '''~~Model~~ identification in biology'''		\| colspan=4 \| '''System identification in biology'''
	\|- valign=top		\|- valign=top
	\| 13 April (T)		\| 13 April (T)
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	\|- valign=top		\|- valign=top
	\| 11 May (T)		\| 11 May (T)
	\| ~~Transcriptional and translational control~~		\| CANCELED
	\|		\|
	\|NA		\|NA
	\|-		\|-
	\| 14 May (F)		\| 14 May (F)
	\| ~~Ultrasensitivity~~		\| RNA-based control and ultrasensitivity [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week7-2.pdf Slides]
	\|		\|
	\|		\|
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	\|- valign=top		\|- valign=top
	\| 18 May (T)		\| 18 May (T)
	\| ~~Theoretical aspects of~~ robustness		\| Introduction: robustness in control theory vs biology [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week8-1.pdf Slides]
	\|
	\|NA		\|NA
	\|-		\|-
	\| 21 May (F)		\| 21 May (F)
	\| ~~Robustness in experimental biology~~		\| Chemotaxis
	\|		\|
	\|		\|

Elisa: /* Course Schedule */

2010-05-08T01:22:12Z

Course Schedule

← Older revision		Revision as of 01:22, 8 May 2010
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	\|- valign=top		\|- valign=top
	\| 4 May (T)		\| 4 May (T)
	\| Design of molecular control systems and demand for gene expression[http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week6-1.pdf Slides]		\| Design of molecular control systems and demand for gene expression [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week6-1.pdf Slides]
	\| [http://www.nature.com/nature/journal/v407/n6804/abs/407651a0.html Large-scale metabolic network organization], [http://chaos.aip.org/chaoeh/v11/i1/p142_s1?isAuthorized=no Genetic modules design principles]		\| [http://www.nature.com/nature/journal/v407/n6804/abs/407651a0.html Large-scale metabolic network organization], [http://chaos.aip.org/chaoeh/v11/i1/p142_s1?isAuthorized=no Genetic modules design principles]
	\|NA		\|NA
	\|-		\|-
	\| 7 May (F)		\| 7 May (F)
	\| Network motifs, structural and dynamical properties		\| Network motifs, structural and dynamical properties, [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week6-2.pdf Slides]
	\|		\|[http://www.nature.com/nrg/journal/v8/n6/abs/nrg2102.html Review on network motifs, theory and experiments]
	\|		\|NA
	\|-		\|-
	\|-		\|-

Elisa: /* Course Schedule */

2010-05-04T22:06:25Z

Course Schedule

← Older revision		Revision as of 22:06, 4 May 2010
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	\|- valign=top		\|- valign=top
	\| 4 May (T)		\| 4 May (T)
	\| Design of molecular control systems and demand for gene expression		\| Design of molecular control systems and demand for gene expression[http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week6-1.pdf Slides]
	\|[http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week6-1.pdf Slides]		\| [http://www.nature.com/nature/journal/v407/n6804/abs/407651a0.html Large-scale metabolic network organization], [http://chaos.aip.org/chaoeh/v11/i1/p142_s1?isAuthorized=no Genetic modules design principles]
	\|NA		\|NA
	\|-		\|-

Elisa: /* Course Schedule */

2010-05-04T22:01:34Z

Course Schedule

← Older revision		Revision as of 22:01, 4 May 2010
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	\|-		\|-
	\| 30 April (F)		\| 30 April (F)
	\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway. [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week5-2.pdf Slides]		\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway. [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week5-2.pdf Slides], [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week5-2-KGalloway.pdf Slides]
	\| [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]		\| [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]
	\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.]		\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.]
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	\| 4 May (T)		\| 4 May (T)
	\| Design of molecular control systems and demand for gene expression		\| Design of molecular control systems and demand for gene expression
	\|		\|[http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week6-1.pdf Slides]
	\|NA		\|NA
	\|-		\|-

Elisa: /* Course Schedule */

2010-04-30T23:53:11Z

Course Schedule

← Older revision		Revision as of 23:53, 30 April 2010
Line 95:		Line 95:
	\|-		\|-
	\| 30 April (F)		\| 30 April (F)
	\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway.		\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway. [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week5-2.pdf Slides]
	\| [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]		\| [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]
	\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.]		\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.]

Elisa: /* Course Schedule */

2010-04-29T22:24:37Z

Course Schedule

← Older revision		Revision as of 22:24, 29 April 2010
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	\| 30 April (F)		\| 30 April (F)
	\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway.		\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway.
	\|		\| [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]
	\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.] [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]		\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.]
	\|-		\|-
	\|-		\|-

Elisa: /* Course Schedule */

2010-04-29T22:23:58Z

Course Schedule

← Older revision		Revision as of 22:23, 29 April 2010
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	\| 27 April (T)		\| 27 April (T)
	\| Definitions and basic theorems [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week5-1.pdf Slides]		\| Definitions and basic theorems [http://www.cds.caltech.edu/~elisa/CDS270-4-2010/CDS270-4-2010-Week5-1.pdf Slides]
	\|		\| [http://arxiv.org/abs/math/0206133 Monotone Control Systems]
	\|NA		\|NA
	\|-		\|-
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	\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway.		\| Predicting oscillations; monotonicity in CRNs. The MAPK pathway.
	\|		\|
	\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.]		\| [http://www.math.rutgers.edu/~sontag/PUBDIR/FTP_DIR/angeli_leenheer_sontag_graph_theoretic_monotone_journal_math_biology_online2009.pdf Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates.] [http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.7404 Oscillations in I/O Monotone Systems Under Negative FeedbackOscillations in I/O Monotone Systems Under Negative Feedback]
	\|-		\|-
	\|-		\|-