Murray Wiki - User contributions [en]

Group Schedule, Fall 2012

2012-09-24T03:46:14Z

Opheliav: /* Week 7: 12-16 Nov */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=60%
|- valign=top
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* [[Schedule|Richard's calendar (travel)]]
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* [[Group Schedule, Summer 2012]]
|}

The schedule for group and subgroup meetings is given below. Everyone should sign up for times to talk in the subgroup meetings. Unless otherwise noted, here are the locations of the meetings:
:{| width=100%
|- valign=top
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* Group meetings - 114 Steele Lab
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* Biocircuits subgroup - 111 Keck
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* NCS subgroup - 110 Steele
|}

{| width=100% border=1
|- valign=top
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=== Week 1: 1-5 Oct ===
'''Biocircuits: 4 Oct (Thu), 10 am - 12 pm'''
* Gita Mahmoudabadi (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

'''NCS: 4 Oct (Thu), 4-5:30 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

<hr>
* Richard out of town Tue-Wed
* No group meeting this week

| width=30% |

=== Week 2: 8-12 Oct ===
'''NCS: 10 Oct (Wed), 4:30-6:00 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

'''Biocircuits: 11 Oct (Thu), 10 am - 12 pm'''
* Research presentation (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

<hr>
* Richard out of town Mon, Tue am, Fri pm
* Aaron Ames visiting on Thu (seminar @ noon)
* No group meeting this week
| width=30% |

=== Week 3: 15-19 Oct ===
* Richard out of town all week
* Biocircuits lab cleanup: 16 Oct (Tue), 10 am - 12 pm

|- valign=top
| width=30% |
=== Week 4: 22-26 Oct ===
'''Biocircuits: 23 Oct (Tue), 10 am - 12 pm'''
* Research presentation (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

'''NCS: 23 Oct (Tue), 4-5:30 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

<hr>
* Ram Vasuvian visiting on Mon (seminar @ 11)
* DARPA Living Foundries west coast meeting on Thu (Richard out)
* No group meeting this week

| width=30% |
=== Week 5: 29 Oct - 2 Nov ===
'''NCS: 31 Oct (Wed), 4:30-6:00 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

'''Biocircuits: 1 Nov (Thu), 10 am - 12 pm'''
* Research presentation (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

<hr>
* Richard out of town on Tue
* iGEM World Jamboree, Fri-Mon
* No group meeting this week
| width=30% |

=== Week 6: 5-9 Nov ===
'''Biocircuits: 6 Nov (Tue), 10 am - 12 pm'''
* Research presentation (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

'''NCS: 7 Nov (Wed), 4:30-6:00 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

<hr>
* No group meeting this week

|- valign=top
| width=30% |
=== Week 7: 12-16 Nov ===
'''Biocircuits: 15 Nov (Thu), 10 am - 12 pm'''
* Ophelia (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

'''NCS: 15 Nov (Thu), 4-5:30 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

<hr>
* No group meeting this week

| width=30% |

=== Week 8: 19-23 Nov ===
* Richard out of town all week
* Biocircuits lab cleanup: 20 Nov (Tue), 10 am - 12 pm
* Thanksgiving break, Thu-Fri
* No group meeting this week

| width=30% |
=== Week 9: 26-30 Nov ===
'''Biocircuits: 27 Nov (Tue), 10 am - 12 pm'''
* Research presentation (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

'''NCS: 28 Nov (Wed), 4:30-6:00 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

<hr>
* DARPA breadboards telecon, Thu @ 9:30 am
* SoCal Control Workshop, Fri (UC San Diego)
* No group meeting this week

|- valign=top
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=== Week 10: 3-7 Dec ===
'''Biocircuits: 4 Dec (Tue), 10 am - 12 pm'''
* Research presentation (30 min)
* Research update (15 min)
* Research update (15 min)
* Lab updates

'''NCS: 5 Dec (Wed), 4:30-6:00 pm'''
* Research update (15 min)
* Research update (15 min)
* Research update (15 min)
* Project updates

<hr>
* No group meeting this week

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=== Week 11: 10-14 Dec ===
* CDC week, no group meetings
* Biocircuits lab cleanup: 11 Dec (Tue), 10 am - 12 pm

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=== Week 12: 17-21 Dec ===
* Winter break, no group meetings
* Richard around Mon-Thu
|}

Feb/Mar 2012 Meetings

2012-02-20T21:01:10Z

Opheliav: /* Tue, 28 Feb */

I would like to meet with everyone sometime in the last week of Feb/first week of March. Please sign up for a time below (note that the slots are different lengths). __NOTOC__

{| width=100% border=1
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{| width=100% cellspacing=0 cellpadding=0
|- bgcolor=yellow
|
<font color=blue> '''In Santa Barbara'''</font> (Vanessa, Ophelia, Dan, Emzo)
==== Tue, 28 Feb ====
* 4:00p - Dan (60m)
* 5:00p - Ophelia (60m)

==== Wed, 29 Feb ====
* 10:00a - Vanessa (60m)
* 3:30p - Open (60m)
|}
<hr>

==== Thu, 1 Mar ====
* 3:00p - Biocircuits subgroup (Dan, Zach, Ophelia)
* 5:00p - Stephanie (45m)
* 5:45p - Necmiye (45m)
* 6:30p - Open (60m)
<hr>

==== Fri, 2 Mar ====
* 9:00a - Open (60m)
* 10:00a - Eugene Lavretsky (75m)
* 11:15a - Hold, Eugene (45m)
:
* 12:00p - Group meeting
* 1:15p - NCS subgroup (Mumu, Pavithra)
* 3:00p - Pavithra (45m)
* 3:45p - Andrea (60m)
* 4:45p - Shaunak (45m)
* 5:30p - Pete (60m)
| width=50% |

==== Mon, 5 Mar ====
* 9:00a - Open (60m)
* 10:00a - BE 150
* 11:00a - Ufuk (45m)
* 11:45a - Open (45m)
:
* 1:00p - Scott Livingston (60m)
* 2:00p - Mumu (60m)
* 3:00p - Robotics subgroup (Pete, Andrea)
* 4:30p - Enoch (60m)
* 5:30p - Open (60m)
* 6:30p - Open (60m)
<hr>

==== Tue, 6 Mar ====
* 9:00a - Open (60m)
* 10:00a -Eric (60m)
* 11:00a - Hold: CDS 90 (60m)

* 2:00p - Hold: CDS 90 (60m)
* 3:00p - Biocircuits subgroup (Enoch, Vanessa, Victoria)
* 5:00p - iGEM
|}

Group Schedule, Winter 2012

2012-02-15T21:12:33Z

Opheliav: /* Week 9: 27 Feb - 2 Mar */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Fall 2011]]
|}

The schedule for group and subgroup meetings is given below. Everyone should sign up for times to talk in the subgroup meetings.


{| width=100% border=1
|- valign=top
| width=30% |

=== Week 1: 4-6 Jan ===
'''NCS: 4 Jan (Wed), 4-6 pm'''
* Jun Liu (15-20 min)
* Joseph Meyerowitz (15-20 min)
* Project updates
'''Group meeting: 5 Jan (Thu), 12-1:15'''
* Ophelia
'''Biocircuits: 5 Jan (Thu), 3-5 pm'''
* Vanessa (10-15 min)
* Jongmin (10-15 min)
* Research update (10-15 min)
* Lab organization, round II
<hr>
Academic holiday, 2-3 Jan<br>
CDS quals, 6 Jan (RMM busy all day)
| width=30% |

=== Week 2: 9-13 Jan ===
'''Robotics: <font color=blue>12 Jan (Thu), 1-3 pm</font>'''
* Shuo (15-20 min)
* Scott Livingston (15-20 min)
* Short research updates (5 min each)
'''Biocircuits: 12 Jan (Thu), 3-5 pm'''
* Marcella (30-40 min)
* Safety briefing @ 4:00 pm (30-40 min)
* Lab updates
'''Group meeting: 13 Jan (Fri), 12-1:15 pm'''
* Domitilla Del Vecchio (MIT)
| width=30% |

=== Week 3: 16-20 Jan ===
'''Biocircuits: 17 Jan (Tue), <font color=blue>3-5</font> pm'''
* Anu (10-15 min)
* Enoch (10-15 min)
* Shaunak (10-15 min)
* Lab updates
* <font color=blue>Note time shift in day (to "regular" day)</font>
'''NCS: 18 Jan (Wed), 4-6 pm'''
* Eric (15-20 min)
* Mumu (15-20 min)
* Project updates
'''Group meeting: 19 Jan (Thu), 12-1:15'''
* Naira Hovakimyan (UIUC)
<hr>
UTRC visit on 17 Jan (Tue)
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|

=== Week 4: 23-27 Jan ===
'''Group meeting: <font color=blue>23 Jan (Mon)</font>, 12-1:15'''
* Necmiye
'''Robotics: <font color=blue>24 Jan (Tue), 1-3 pm</font>'''
* Stephanie (15-20 min)
* Pete (15-20 min)
* Short research updates (5 min each)
'''Biocircuits: 24 Jan (Tue), 3-5 pm'''
* Ophelia (30-40 min)
* Emzo (10-15 min)
* Dan (10-15 min)
* Lab updates
|

=== Week 5: 30 Jan - 3 Feb ===
'''Biocircuits: 31 Jan (Tue), 3-5 pm'''
* Elisa (30-40 min)
* Nikki(10-15 min)
* Zach (10-15 min)
* Lab updates
'''NCS: 1 Feb (Wed), 4-6 pm'''
* Marcella (15-20 min)
* Ufuk (15-20 min)
* Project updates
'''Group meeting: 2 Feb (Thu), 12-1:15'''
* Ufuk
|

=== Week 6: 6 Feb - 10 Feb ===
'''Biocircuits: 7 Feb (Tue), 3-5 pm'''
* Vanessa (30-40 min)
* Paul (10-15 min)
* Victoria (10-15 min)
* Lab updates
'''Group meeting: 8 Feb (Wed), 12-1:15'''
* Andrea
'''Robotics: 8 Feb (Wed), 4-6 pm'''
* Scott Livingston (15-20 min)
* Andrea (15-20 min)
* Short research updates (5 min each)

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|

=== Week 7: 13-17 Feb ===
'''NCS: 15 Feb (Wed), 4-6 pm'''
* Necmiye (15-20 min)
* <s>Scott Livingston</s> (15-20 min)
* Project updates
'''Group meeting: 16 Feb (Thu), 12-1:15'''
* Chris Kempes
'''Biocircuits: 16 Feb (Thu), 3-5 pm'''
* Anu (30-40 min)
* Marcella (10-15 min)
* Paul (10-15 min)
* Lab updates
* <font color=blue>Note change in day</font>
|

=== Week 8: 20-24 Feb ===
'''Biocircuits: 21 Feb (Tue), 3-5 pm'''
* Emzo (30-40 min)
* Jongmin (10-15 min)
* Research update (10-15 min)
* Lab updates
'''Robotics: 22 Feb (Wed), 4-6 pm'''
* Shuo (15-20 min)
* Eric (15-20 min)
* Short research updates (5 min each)
'''Group meeting: 23 Feb (Thu), 12-1:15'''
* Jongmin
|

=== Week 9: 27 Feb - 2 Mar ===
'''Biocircuits: 28 Feb (Tue), 3-5 pm'''
* Dan (30-40 min)
* Zach? (10-15 min)
* Ophelia? (10-15 min)
* Lab updates
* <font color=blue>Will probably shift to 2 Mar, 3-5 pm</font>
'''NCS: 29 Feb (Wed), 4-6 pm'''
* Mumu (15-20 min)
* Pavithra (15-20 min)
* Project updates
* <font color=blue>Will probably shift to 2 Mar, 1-3 pm</font>
'''Group meeting: 2 Mar (Fri), 12-1:15'''
* Shaunak
|- valign=top
|

=== Week 10: 5-9 Mar ===
'''Biocircuits: 6 Mar (Tue), 3-5 pm'''
* Enoch (30-40 min)
* Vanessa (10-15 min)
* Victoria? (10-15 min)
* Lab updates
'''Robotics: 7 Mar (Wed), 4-6 pm'''
* Pete (15-20 min)
* Andrea (15-20 min)
* Short research updates (5 min each)
'''Group meeting: 9 Mar (Fri), 12-1:15'''
* Hold: possible job talk
|

=== Week 11: 12-16 Mar ===
Finals week; Richard out of town
|
=== Week 12: 19-23 Mar ===
Spring break; Richard out of town
|}

Group Schedule, Winter 2012

2011-12-12T17:20:50Z

Opheliav: /* Week 4: 23-27 Jan */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Fall 2011]]
|}

The schedule for group and subgroup meetings is given below. Everyone should sign up for times to talk in the subgroup meetings.

<font color=red>
==== Directions: ====
* '''Biocircuits (Tue or Thu, 3-5 pm)''': graduate students should give 1 longer presentation per term + 1-2 additional research updates; postdocs, undergrads should give 1-2 research updates.
* '''NCS (Wed, 4-6 pm)''': grad students should speak 2 times per term for 15-20 min (+ discussion), postdocs and undergrads at least once
* '''Robotics (Wed, 4-6 pm)''': grad students and postdocs should speak 2 times per term for 15-20 min (+ discussion), undergrads at least once; will also do ad hoc updates
* '''Group meeting talks (WThF, 12-1:15)''': postdocs and senior grad students (G4+) should feel free to sign up for a group meeting talk (biocircuit grad students: this can be in place of longer subgroup talk)
</font>

<center>
'''Please sign up for at least one presentation in the first six weeks of the term.'''
</center>

<font color=blue>Note that some of the meetings might need to shift, as noted; only sign up for those slots if you can make both times listed</font>
<br>

{| width=100% border=1
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=== Week 1: 4-6 Jan ===
'''NCS: 4 Jan (Wed), 4-6 pm'''
* Jun Liu (15-20 min)
* Joseph Meyerowitz (15-20 min)
* Project updates
'''Group meeting: 5 Jan (Thu), 12-1:15'''
* Ophelia
'''Biocircuits: 5 Jan (Thu), 3-5 pm'''
* Safety briefing (30-40 min)
* Research update (10-15 min)
* Research update (10-15 min)
* Lab updates
<hr>
Academic holiday, 2-3 Jan<br>
CDS quals, 6 Jan (RMM busy all day)
| width=30% |

=== Week 2: 9-13 Jan ===
'''Robotics: 11 Jan (Wed), 4-6 pm'''
* Shuo (15-20 min)
* Open (15-20 min)
* Short research updates (5 min each)
* <font color=blue>Might shift to Fri, 1-3 pm</font>
'''Biocircuits: 12 Jan (Thu), 3-5 pm'''
* Marcella (30-40 min)
* Research update (10-15 min)
* Research update (10-15 min)
* Lab updates
'''Group meeting: 13 Jan (Fri), 12-1:15 pm'''
* Domitilla Del Vecchio (MIT)
| width=30% |

=== Week 3: 16-20 Jan ===
'''Biocircuits: 17 Jan (Tue), 2-4 pm'''
* Research presentation (30-40 min)
* Dan (10-15 min)
* Shaunak (10-15 min)
* Lab updates
* <font color=blue>Note time shift in day (to "regular" day)</font>
'''NCS: 18 Jan (Wed), 4-6 pm'''
* Eric (15-20 min)
* Necmiye (15-20 min)
* Project updates
'''Group meeting: 19 Jan (Thu), 12-1:15'''
* Naira Hovakimyan (UIUC)
|- valign=top
|

=== Week 4: 23-27 Jan ===
'''Biocircuits: 24 Jan (Tue), 3-5 pm'''
* Ophelia (30-40 min)
* Emzo (10-15 min)
* Enoch (10-15 min)
* Lab updates
'''Group meeting: 25 Jan (Wed), 12-1:15'''
* Necmiye
'''Robotics: 25 Jan (Wed), 4-6 pm'''
* Stephanie (15-20 min)
* Pete (15-20 min)
* Short research updates (5 min each)
* <font color=blue>Might shift to Fri, 1-3 pm</font>
|

=== Week 5: 30 Jan - 3 Feb ===
'''Biocircuits: 31 Jan (Tue), 3-5 pm'''
* Research presentation (30-40 min)
* Nikki(10-15 min)
* Zach (10-15 min)
* Lab updates
'''NCS: 1 Feb (Wed), 4-6 pm'''
* Marcella (15-20 min)
* Ufuk (15-20 min)
* Project updates
'''Group meeting: 2 Feb (Thu), 12-1:15'''
* Jongmin
|

=== Week 6: 6 Feb - 10 Feb ===
'''Biocircuits: 7 Feb (Tue), 3-5 pm'''
* Research presentation (30-40 min)
* Paul (10-15 min)
* Victoria (10-15 min)
* Lab updates
'''Group meeting: 8 Feb (Wed), 12-1:15'''
* Andrea
'''Robotics: 8 Feb (Wed), 4-6 pm'''
* Open (15-20 min)
* Open (15-20 min)
* Short research updates (5 min each)

|- valign=top
|

=== Week 7: 13-17 Feb ===
'''NCS: 15 Feb (Wed), 4-6 pm'''
* Open (15-20 min)
* Open (15-20 min)
* Project updates
'''Group meeting: 16 Feb (Thu), 12-1:15'''
* Open
'''Biocircuits: 16 Feb (Thu), 3-5 pm'''
* Research presentation (30-40 min)
* Marcella (10-15 min)
* Research update (10-15 min)
* Lab updates
* <font color=blue>Note change in day</font>
|

=== Week 8: 20-24 Feb ===
'''Biocircuits: 21 Feb (Tue), 3-5 pm'''
* Emzo (30-40 min)
* Research update (10-15 min)
* Research update (10-15 min)
* Lab updates
'''Robotics: 22 Feb (Wed), 4-6 pm'''
* Shuo (15-20 min)
* Eric (15-20 min)
* Short research updates (5 min each)
'''Group meeting: 23 Feb (Thu), 12-1:15'''
* Hold: possible job talk
|

=== Week 9: 27 Feb - 2 Mar ===
'''Biocircuits: 28 Feb (Tue), 3-5 pm'''
* Dan (30-40 min)
* Research update (10-15 min)
* Research update (10-15 min)
* Lab updates
* <font color=blue>Will probably shift to 2 Mar, 3-5 pm</font>
'''NCS: 29 Feb (Wed), 4-6 pm'''
* Open (15-20 min)
* Open (15-20 min)
* Project updates
* <font color=blue>Will probably shift to 2 Mar, 1-3 pm</font>
'''Group meeting: 2 Mar (Fri), 12-1:15'''
* Shaunak
|- valign=top
|

=== Week 10: 5-9 Mar ===
'''Biocircuits: 6 Mar (Tue), 3-5 pm'''
* Enoch (30-40 min)
* Research update (10-15 min)
* Research update (10-15 min)
* Lab updates
'''Robotics: 7 Mar (Wed), 4-6 pm'''
* Pete (15-20 min)
* Open (15-20 min)
* Short research updates (5 min each)
'''Group meeting: 9 Mar (Fri), 12-1:15'''
* Hold: possible job talk
|

=== Week 11: 12-16 Mar ===
Finals week; Richard out of town
|
=== Week 12: 19-23 Mar ===
Spring break; Richard out of town
|}

Dec 2011 meetings

2011-12-07T03:17:57Z

Opheliav: /* 19 Dec (Mon) */

The list below has times that I am available to meet on 15-21 Dec. __NOTOC__
* Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).
* To maximize the chance I get to meet with everyone, '''please sign up for times on 19-22 Dec if you are around that week'''

<br>
<table width=100% border=1>
<tr valign=top><td width=20%>
==== 15 Dec (Thu) ====
{{agenda begin}}
{{agenda begin}}
{{agenda item|10:00a|Enoch}}
{{agenda item|11:00a|Victoria}}
{{agenda item||}}
{{agenda item|4:30p|Shaunak}}
{{agenda item|5:30p|Hamed}}
{{agenda item|6:30p|Open}}
{{agenda end}}
</td><td width=20%>

==== 16 Dec (Fri) ====
{{agenda begin}}
{{agenda item|10:00a|Open}}
{{agenda item|11:00a|Open}}
{{agenda item||}}
{{agenda item|2:30p|Shuo}}
{{agenda item|3:30p|Jongmin/Shaunak}}
{{agenda item|4:30p|Dominic}}
{{agenda item|5:30p|Andrea}}
{{agenda end}}
</td><td width=20%>

==== 19 Dec (Mon) ====
{{agenda begin}}
{{agenda item|12:30p|Open}}
{{agenda item|1:30p|Lab inspection}}
{{agenda item||}}
{{agenda item|5:00p|Ophelia}}
{{agenda end}}
</td><td width=20%>

==== 20 Dec (Tue) ====
{{agenda begin}}
{{agenda item|11:00a|Open}}
{{agenda item|10:00a|Open}}
{{agenda item||}}
{{agenda item|2:00p|Open}}
{{agenda item|3:00p|Open}}
{{agenda item|4:00p|Open}}
{{agenda end}}
</td><td width=20%>

==== 21 Dec (Wed) ====
{{agenda begin}}
{{agenda item|11:30a|Open}}
{{agenda item||}}
{{agenda item|2:00p|Open}}
{{agenda item|4:00p|Open}}
{{agenda item|5:00p|Open}}
{{agenda end}}
</td></tr>
</table>

Group Schedule, Fall 2011

2011-09-27T02:44:20Z

Opheliav: /* Week 6: 31 Oct - 4 Nov */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Summer 2011]]
|}

The schedule for group and subgroup meetings is given below. Everyone should sign up for times to talk in the subgroup meetings.
* Biocircuits: everyone should speak 2-3 times per term
* NCS/robotics: grad student should speak 2 times per term, postdocs and undergrads at least once
* Students/postdocs applying for jobs: if you want to give a "job talk" in group meeting, let me know
Note that some of the meetings might need to shift; only sign up for those slots if you can make both times listed
<br>

{| width=100% border=1
|- valign=top
| width=30% |
=== Week 1: 26-30 Sep ===
27 Sep (Tue), 1-3 pm: Biocircuits
* Paul Nguyen
* Vanessa Jonsson
* Open (10-15 min)
28 Sep (Wed), 12 pm: Group meeting
* Hold: Pavrithra Prabhakar
28 Sep (Wed), 1-3 pm: NCS
* Richard (Boeing report)
* Scott Livingston
| width=30% |

=== Week 2: 3-7 Oct ===
3 Oct (Mon), 12 pm: Group meeting
* Dan Siegal-Gaskins
4 Oct (Tue), 1-3 pm; Biocircuits
* Enoch (10-15 min)
* Jongmin (10-15 min)
* emzo (10-15 min)
5 Oct (Wed), 1-3 pm: Robotics
* Open (15-20 min)
* Dom
* ''Note'': might shift to 3:30-5 pm
<hr>
ARO synthetic biology workshop Thu-Fri
* Possible lab tours on Fri morning
| width=30% |

=== Week 3: 10-14 Oct ===
No group meeting

11 Oct (Tue), <font color=blue>12:30-2 pm</font>: Biocircuits
* Shaunak (10-15 min)
* Ophelia
* Open (10-15 min)
12 Oct (Wed), 1-3 pm: NCS
* Jun (15-20 min)
* Ufuk (15-20 min)
<hr>
Rob Wood visiting on 11 Oct (Tue)

Boeing Annual Review on 12 Oct (Wed)

SoCal NLC on 14 Oct (Fri) @ UCLA
|- valign=top
|

=== Week 4: 17-21 Oct ===
18 Oct (Tue), 1-3 pm: Biocircuits
* Elisa
* Marcella (10-15 min)
* Open (10-15 min)
19 Oct (Wed), 12 pm: Group meeting
* Hold: job talk
19 Oct (Wed), 1-3 pm: Robotics
* Shuo (15-20 min)
* pete (15-20 min)
|

=== Week 5: 24-28 Oct ===
25 Oct (Tue), <font color=blue>10:30-12</font>: Biocircuits
* Enoch (10-15 min)
* Vanessa Jonsson
* ''Note'': might shift to 12:30-2 pm
26 Oct (Wed), 12 pm: Group meeting
* Hold: UTC visitor?
26 Oct (Wed), <font color=blue>3:30-5 pm</font>: NCS
* Mumu (15-20 min)
* Linlin (15-20 min)
<hr>
MuSyC/UTC workshop on Wed-Thu
|

=== Week 6: 31 Oct - 4 Nov ===
1 Nov (Tue), 1-3 pm; Biocircuits
* dsg
* emzo (10-15 min)
* Ophelia
2 Nov (Wed), 1-3 pm: Robotics
* Stephanie (15-20 min)
* Scott Livingston
3 Nov (Thu), 12 pm: Group meeting
* Hold: Qi Song (incoming visitor)
|- valign=top
|

=== Week 7: 7-11 Nov ===
<font color=blue>7 Nov (Mon), 12:30-2:30 pm</font>: Biocircuits
* Enoch (10-15 min)
* Shaunak (10-15 min)
10 Nov (Thu), 12 pm: Group meeting
* Hold: job talk
<font color=blue>10 Nov (Thu), 1-3 pm</font>: NCS
* Open (15-20 min)
* Necmiye (15-20 min)
* ''Note'': Might move to Mon, 2:30-4 pm
<hr>
Richard out of town Tue-Wed, possibly Thu-Fri
|

=== Week 8: 14-18 Nov ===
No group meeting

No biocircuits meeting

<font color=blue>18 Nov (Thu), 4-5:30 pm</font>: Robotics
* Shuo (15-20 min)
* pete (15-20 min)
<hr>
Richard out of town Tue-Wed

MuSyC workshop/review Wed-Fri

MPP STC proposal meeting, 13-14 Nov
|

=== Week 9: 21-25 Nov ===
22 Nov (Tue), <font color=blue>12:30-2 pm</font>: Biocircuits
* Elisa
* Marcella (10-15 min)
* emzo (10-15 min)
23 Nov (Wed), 12 pm: group meeting
* Dionysios
23 Nov (Wed), 1-3 pm: NCS
* Mumu (15-20 min)
* Open (15-20 min)
<hr>
Thanksgiving holiday: Thu-Fri
|- valign=top
|

=== Week 10: 28 Nov - 2 Dec ===
29 Nov (Tue), 1-3 pm: Biocircuits
* Vanessa Jonsson
* dsg
* Ophelia
30 Nov (Wed), 12 pm: Group meeting
* Hold: job talk
30 Nov (Wed), 1-3 pm: Robotics
* Dom
* Open (15-20 min)
|

=== Week 11: 5-9 Dec ===
Final weeks week, Richard out of town

No group or subgroup meetings
|
=== Week 12: 12-16 Dec ===
CDC week, Richard (probably) in town

Group and subgroup meetings TBD
|}

Group Schedule, Fall 2011

2011-09-23T22:40:32Z

Opheliav: /* Week 10: 28 Nov - 2 Dec */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Summer 2011]]
|}

The schedule for group and subgroup meetings is given below. Everyone should sign up for times to talk in the subgroup meetings.
* Biocircuits: everyone should speak 2-3 times per term
* NCS/robotics: grad student should speak 2 times per term, postdocs and undergrads at least once
* Students/postdocs applying for jobs: if you want to give a "job talk" in group meeting, let me know
Note that some of the meetings might need to shift; only sign up for those slots if you can make both times listed
<br>

{| width=100% border=1
|- valign=top
| width=30% |
=== Week 1: 26-30 Sep ===
27 Sep (Tue), 1-3 pm: Biocircuits
* Paul Nguyen
* Vanessa Jonsson
* Open (10-15 min)
28 Sep (Wed), 12 pm: Group meeting
* Hold: Pavrithra Prabhakar
28 Sep (Wed), 1-3 pm: NCS
* Richard (Boeing report)
* Scott Livingston
| width=30% |

=== Week 2: 3-7 Oct ===
3 Oct (Mon), 12 pm: Group meeting
* Dan Siegal-Gaskins
4 Oct (Tue), 1-3 pm; Biocircuits
* Enoch (10-15 min)
* Jongmin (10-15 min)
* Open (10-15 min)
5 Oct (Wed), 1-3 pm: Robotics
* Open (15-20 min)
* Dom
* ''Note'': might shift to 3:30-5 pm
<hr>
ARO synthetic biology workshop Thu-Fri
* Possible lab tours on Fri morning
| width=30% |

=== Week 3: 10-14 Oct ===
No group meeting

11 Oct (Tue), <font color=blue>12:30-2 pm</font>: Biocircuits
* Shaunak (10-15 min)
* Ophelia
* Open (10-15 min)
12 Oct (Wed), 1-3 pm: NCS
* Jun (15-20 min)
* Ufuk (15-20 min)
<hr>
Rob Wood visiting on 11 Oct (Tue)

Boeing Annual Review on 12 Oct (Wed)
|- valign=top
|

=== Week 4: 17-21 Oct ===
18 Oct (Tue), 1-3 pm: Biocircuits
* Elisa
* Marcella (10-15 min)
* Open (10-15 min)
19 Oct (Wed), 12 pm: Group meeting
* Hold: job talk
19 Oct (Wed), 1-3 pm: Robotics
* Shuo (15-20 min)
* pete (15-20 min)
|

=== Week 5: 24-28 Oct ===
25 Oct (Tue), <font color=blue>10:30-12</font>: Biocircuits
* Enoch (10-15 min)
* Vanessa Jonsson
* ''Note'': might shift to 12:30-2 pm
26 Oct (Wed), 12 pm: Group meeting
* Hold: job talk
26 Oct (Wed), <font color=blue>3:30-5 pm</font>: NCS
* Mumu (15-20 min)
* Linlin (15-20 min)
|

=== Week 6: 31 Oct - 4 Nov ===
1 Nov (Tue), 1-3 pm; Biocircuits
* dsg
* Open (10-15 min)
* Open (10-15 min)
2 Nov (Wed), 1-3 pm: Robotics
* Stephanie (15-20 min)
* Scott Livingston
3 Nov (Thu), 12 pm: Group meeting
* Hold: Qi Song (incoming visitor)
|- valign=top
|

=== Week 7: 7-11 Nov ===
<font color=blue>7 Nov (Mon), 12:30-2:30 pm</font>: Biocircuits
* Enoch (10-15 min)
* Shaunak (10-15 min)
10 Nov (Thu), 12 pm: Group meeting
* Hold: job talk
<font color=blue>10 Nov (Thu), 1-3 pm</font>: NCS
* Open (15-20 min)
* Necmiye (15-20 min)
* ''Note'': Might move to Mon, 2:30-4 pm
<hr>
Richard out of town Tue-Wed, possibly Thu-Fri
|

=== Week 8: 14-18 Nov ===
No group meeting

No biocircuits meeting

<font color=blue>18 Nov (Thu), 4-5:30 pm</font>: Robotics
* Shuo (15-20 min)
* pete (15-20 min)
<hr>
Richard out of town Tue-Wed

MuSyC workshop/review Wed-Fri

MPP STC proposal meeting, 13-14 Nov
|

=== Week 9: 21-25 Nov ===
22 Nov (Tue), <font color=blue>12:30-2 pm</font>: Biocircuits
* Elisa
* Marcella (10-15 min)
* Open (10-15 min)
23 Nov (Wed), 12 pm: group meeting
* Dionysios
23 Nov (Wed), 1-3 pm: NCS
* Mumu (15-20 min)
* Open (15-20 min)
<hr>
Thanksgiving holiday: Thu-Fri
|- valign=top
|

=== Week 10: 28 Nov - 2 Dec ===
29 Nov (Tue), 1-3 pm: Biocircuits
* Vanessa Jonsson
* dsg
* Ophelia
30 Nov (Wed), 12 pm: Group meeting
* Hold: job talk
30 Nov (Wed), 1-3 pm: Robotics
* Dom
* Open (15-20 min)
|

=== Week 11: 5-9 Dec ===
Final weeks week, Richard out of town

No group or subgroup meetings
|
=== Week 12: 12-16 Dec ===
CDC week, Richard (probably) in town

Group and subgroup meetings TBD
|}

Group Schedule, Fall 2011

2011-09-23T22:38:04Z

Opheliav: /* Week 3: 10-14 Oct */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Summer 2011]]
|}

The schedule for group and subgroup meetings is given below. Everyone should sign up for times to talk in the subgroup meetings.
* Biocircuits: everyone should speak 2-3 times per term
* NCS/robotics: grad student should speak 2 times per term, postdocs and undergrads at least once
* Students/postdocs applying for jobs: if you want to give a "job talk" in group meeting, let me know
Note that some of the meetings might need to shift; only sign up for those slots if you can make both times listed
<br>

{| width=100% border=1
|- valign=top
| width=30% |
=== Week 1: 26-30 Sep ===
27 Sep (Tue), 1-3 pm: Biocircuits
* Paul Nguyen
* Vanessa Jonsson
* Open (10-15 min)
28 Sep (Wed), 12 pm: Group meeting
* Hold: Pavrithra Prabhakar
28 Sep (Wed), 1-3 pm: NCS
* Richard (Boeing report)
* Scott Livingston
| width=30% |

=== Week 2: 3-7 Oct ===
3 Oct (Mon), 12 pm: Group meeting
* Dan Siegal-Gaskins
4 Oct (Tue), 1-3 pm; Biocircuits
* Enoch (10-15 min)
* Jongmin (10-15 min)
* Open (10-15 min)
5 Oct (Wed), 1-3 pm: Robotics
* Open (15-20 min)
* Dom
* ''Note'': might shift to 3:30-5 pm
<hr>
ARO synthetic biology workshop Thu-Fri
* Possible lab tours on Fri morning
| width=30% |

=== Week 3: 10-14 Oct ===
No group meeting

11 Oct (Tue), <font color=blue>12:30-2 pm</font>: Biocircuits
* Shaunak (10-15 min)
* Ophelia
* Open (10-15 min)
12 Oct (Wed), 1-3 pm: NCS
* Jun (15-20 min)
* Ufuk (15-20 min)
<hr>
Rob Wood visiting on 11 Oct (Tue)

Boeing Annual Review on 12 Oct (Wed)
|- valign=top
|

=== Week 4: 17-21 Oct ===
18 Oct (Tue), 1-3 pm: Biocircuits
* Elisa
* Marcella (10-15 min)
* Open (10-15 min)
19 Oct (Wed), 12 pm: Group meeting
* Hold: job talk
19 Oct (Wed), 1-3 pm: Robotics
* Shuo (15-20 min)
* pete (15-20 min)
|

=== Week 5: 24-28 Oct ===
25 Oct (Tue), <font color=blue>10:30-12</font>: Biocircuits
* Enoch (10-15 min)
* Vanessa Jonsson
* ''Note'': might shift to 12:30-2 pm
26 Oct (Wed), 12 pm: Group meeting
* Hold: job talk
26 Oct (Wed), <font color=blue>3:30-5 pm</font>: NCS
* Mumu (15-20 min)
* Linlin (15-20 min)
|

=== Week 6: 31 Oct - 4 Nov ===
1 Nov (Tue), 1-3 pm; Biocircuits
* dsg
* Open (10-15 min)
* Open (10-15 min)
2 Nov (Wed), 1-3 pm: Robotics
* Stephanie (15-20 min)
* Scott Livingston
3 Nov (Thu), 12 pm: Group meeting
* Hold: Qi Song (incoming visitor)
|- valign=top
|

=== Week 7: 7-11 Nov ===
<font color=blue>7 Nov (Mon), 12:30-2:30 pm</font>: Biocircuits
* Enoch (10-15 min)
* Shaunak (10-15 min)
10 Nov (Thu), 12 pm: Group meeting
* Hold: job talk
<font color=blue>10 Nov (Thu), 1-3 pm</font>: NCS
* Open (15-20 min)
* Necmiye (15-20 min)
* ''Note'': Might move to Mon, 2:30-4 pm
<hr>
Richard out of town Tue-Wed, possibly Thu-Fri
|

=== Week 8: 14-18 Nov ===
No group meeting

No biocircuits meeting

<font color=blue>18 Nov (Thu), 4-5:30 pm</font>: Robotics
* Shuo (15-20 min)
* pete (15-20 min)
<hr>
Richard out of town Tue-Wed

MuSyC workshop/review Wed-Fri

MPP STC proposal meeting, 13-14 Nov
|

=== Week 9: 21-25 Nov ===
22 Nov (Tue), <font color=blue>12:30-2 pm</font>: Biocircuits
* Elisa
* Marcella (10-15 min)
* Open (10-15 min)
23 Nov (Wed), 12 pm: group meeting
* Dionysios
23 Nov (Wed), 1-3 pm: NCS
* Mumu (15-20 min)
* Open (15-20 min)
<hr>
Thanksgiving holiday: Thu-Fri
|- valign=top
|

=== Week 10: 28 Nov - 2 Dec ===
29 Nov (Tue), 1-3 pm: Biocircuits
* Vanessa Jonsson
* dsg
* Open (10-15 min)
30 Nov (Wed), 12 pm: Group meeting
* Hold: job talk
30 Nov (Wed), 1-3 pm: Robotics
* Dom
* Open (15-20 min)
|

=== Week 11: 5-9 Dec ===
Final weeks week, Richard out of town

No group or subgroup meetings
|
=== Week 12: 12-16 Dec ===
CDC week, Richard (probably) in town

Group and subgroup meetings TBD
|}

Group Schedule, Summer 2011

2011-06-13T19:49:25Z

Opheliav: /* 29 Aug - 2 Sep */

__NOTOC__
This page contains information about various upcoming events that are of interest to the group.
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Spring 2011]]
|}

=== Summer Schedule ===

{| border=1 width=100%
|- valign=top
| '''Week'''
| '''Mini-group meetings'''
| '''Group meeting'''
| '''Other'''
|- valign=top
|
===== 13-17 Jun =====
|
None
|
None
|
RMM out all week
|- valign=top
|
===== 20-24 Jun =====
|
* iGEM: Mon @ 9:30
* SURF meetings, cycle 0: (sign on at [[SURF 2011]] page)
* NCS: Tue, 1-3 pm
** Speaker 1: Necmiye
** Speaker 2: open
|
Tue @ 12: speaker TBD (external)
|
RMM out 22-24 Jun
|- valign=top
|

===== 27 Jun - 1 Jul =====
|
* Robotics: Mon, 1-3 pm
** Speaker 1: Pete
** Speaker 2: open
* Biocircuits: Tue, 9a-2p
** Overview presentations (all; 10 min each)
** Lunch will be provided
* SURF meetings, cycle 1: Tue pm
** 4:00 pm: open
** 4:30 pm: open
** 5:00 pm: open
** 5:30 pm: open
** 6:00 pm: open
|
Mon @ 12: Nils Napp
|
* Nils Napp visiting
* RMM out 29 Jun-1 Jul (ACC)
|- valign=top
|

===== 4-8 Jul =====
|
* Biocircuits: Tue, 10-12
** Speaker 1: Marcella
** Speaker 2: open
** Speaker 3: open
* NCS: Thu, 1-3 pm
** Speaker 3: Scott Livingston
** Speaker 4: open
* SURF meetings, cycle 1: Thu pm
** 3:00 pm: open
** 3:30 pm: open
** 4:00 pm: open
** 4:30 pm: open
** 5:00 pm: open

|
Tue @ 12: Henrik Sandberg
|
* Institute holiday on Mon
* Eric Colinet visiting on 5 Jul
* Henrik Sandberg visiting 3-9 Jul
|- valign=top
|

===== 11-15 Jul =====
|
* iGEM: Mon @ 5 pm?
* Biocircuits: Tue, 10a-12p
** Speaker 4: Ophelia
** Speaker 5: open
** iGEM presentation (30 min)
* Robotics: Tue, 1p-3p
** Speaker 3: Shuo
** Speaker 4: Sandeep
* SURF meetings, cycle 2: Thu, pm
** 3:00 pm: open
** 3:30 pm: open
** 4:00 pm: open
** 4:30 pm: open
** 5:00 pm: open
|
Mon @ 12: Speaker TBD
|
|- valign=top
|

===== 18-22 Jul =====
|
* SURF meetings, cycle 2: Thu pm
** 2:30p: open
** 3:00p: open
** 3:30p: open
** 4:00p: open
** 4:30p: open
* iGEM: Thu, 5-6p?
* Biocircuits: Fri, 10a-12p
** Speaker 6: Ye Yuan
** Speaker 7: Dionysios
** SURF 1: Paul
* Robotics: Fri, 1p-3p
** Speaker 5: open
** SURF 1: Magnus
** SURF 2: Stephanie
* NCS: Fri, 3p-5p
** Speaker 5: Mumu
** Speaker 6: Ufuk
** SURF 1: Petter
|
Fri @ 12: Josh Michener
|
* RMM out 18-21 Jul am
* Josh Michener visiting 22 Jul
|- valign=top
|

===== 25-29 Jul =====
|
|
|
* RMM out 25-29 Jul
|- valign=top
|

===== 1-5 Aug =====
|
* iGEM: 5-6p?
* Biocircuits: Fri, 10a-12p
** Speaker 8: Marcella
** SURF 2: Ishan
** SURF 3: Arjun
* NCS: Fri, 1p-3p
** Speaker 7: Scott Livingston
** Speaker 8: Eric
** SURF 2: Yuchen
* SURF meetings, cycle 3: Fri, pm
** 3:00p: open
** 3:30p: open
** 4:00p: open
** 4:30p: open
** 5:00p: open
|
Fri @ 12: speaker TBD
|
* RMM out 1-4 Aug
|- valign=top
|

===== 8-12 Aug =====
|
* Robotics: Tue, 1p-3p
** Speaker 6: open
** SURF 3: Klavdia
* SURF meetings, cycle 3: Tue, pm
** 3:00p: open
** 4:30p: open
** 4:00p: open
** 5:30p: open
** 6:00p: open
* Biocircuits: Thu, 10a-12p
** Speaker 9: Jongmin
** Speaker 10: open
** SURF 4: Keshav
* iGEM: 5p-6p
|
Thu @ 12: speaker TBD
|
|- valign=top
|

===== 15-19 Aug =====
|
|
|
RMM out 15-19 Aug
|- valign=top
|

===== 22-26 Aug =====
|
* Biocircuits: Mon, 10a-12p
** Speaker 11: open
** Speaker 12: open
** Speaker 13: open
* Robotics: Mon, 1p-3p
** Speaker 7: open
** Speaker 8: open
* NCS: Mon, 3p-5p
** Speaker 9: open
** Speaker 10: Necmiye
* iGEM: 5p-6p
|
Tue @ 12: speaker TBD
|
RMM out: 25 Aug (pm) - 1 Sep (pm)
|- valign=top
|

===== 29 Aug - 2 Sep =====
|
* Robotics: Thu, 1-3p
** Speaker 9: Shuo
** Speaker 10: Pete
* NCS: Thu, 3-5p
** Speaker 11: Asghar
** Speaker 12: Eric
* iGEM: Thu, 5p-6p
* Biocircuits; Fri, 10a-12p
** Speaker 14: Ophelia
** Speaker 15: open
** Speaker 16: open

|
Fri @ 12p (tentative): speaker TBD
|
* RMM out: 25 Aug (pm) - 1 Sep (pm)
|- valign=top
|

===== 5-9 Sep =====
|
|
|
* RMM out, 5-9 Sep
|- valign=top
|
===== 12-16 Sep =====
|
* Biocircuits: Tue, 10a-12p
** Speaker 17: open
** Speaker 18: open
** Speaker 19: open
* NCS: Wed, 1p-3p
** Speaker 13: Mumu
** Speaker 14: Ufuk
|
Tue @ 12p: speaker TBD
|
|- valign=top
|

===== 19-23 Sep =====
|
* Robotics: Mon, 1p-3p
** Speaker 11: Asghar
** Speaker 12: open
* Biocircuits: Tue, 10a-12p
** Speaker 20: open
** Speaker 21: open
** Speaker 22: open
|
Tue @ 12p: speaker TBD
|
RMM out, 20 Sep (pm) to 23 Sep
|}

Group Schedule, Summer 2011

2011-06-13T19:48:39Z

Opheliav: /* 11-15 Jul */

__NOTOC__
This page contains information about various upcoming events that are of interest to the group.
{| width=60%
|- valign=top
| width=50% |
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar (travel)]
| width=50% |
* [[Group Schedule, Spring 2011]]
|}

=== Summer Schedule ===

{| border=1 width=100%
|- valign=top
| '''Week'''
| '''Mini-group meetings'''
| '''Group meeting'''
| '''Other'''
|- valign=top
|
===== 13-17 Jun =====
|
None
|
None
|
RMM out all week
|- valign=top
|
===== 20-24 Jun =====
|
* iGEM: Mon @ 9:30
* SURF meetings, cycle 0: (sign on at [[SURF 2011]] page)
* NCS: Tue, 1-3 pm
** Speaker 1: Necmiye
** Speaker 2: open
|
Tue @ 12: speaker TBD (external)
|
RMM out 22-24 Jun
|- valign=top
|

===== 27 Jun - 1 Jul =====
|
* Robotics: Mon, 1-3 pm
** Speaker 1: Pete
** Speaker 2: open
* Biocircuits: Tue, 9a-2p
** Overview presentations (all; 10 min each)
** Lunch will be provided
* SURF meetings, cycle 1: Tue pm
** 4:00 pm: open
** 4:30 pm: open
** 5:00 pm: open
** 5:30 pm: open
** 6:00 pm: open
|
Mon @ 12: Nils Napp
|
* Nils Napp visiting
* RMM out 29 Jun-1 Jul (ACC)
|- valign=top
|

===== 4-8 Jul =====
|
* Biocircuits: Tue, 10-12
** Speaker 1: Marcella
** Speaker 2: open
** Speaker 3: open
* NCS: Thu, 1-3 pm
** Speaker 3: Scott Livingston
** Speaker 4: open
* SURF meetings, cycle 1: Thu pm
** 3:00 pm: open
** 3:30 pm: open
** 4:00 pm: open
** 4:30 pm: open
** 5:00 pm: open

|
Tue @ 12: Henrik Sandberg
|
* Institute holiday on Mon
* Eric Colinet visiting on 5 Jul
* Henrik Sandberg visiting 3-9 Jul
|- valign=top
|

===== 11-15 Jul =====
|
* iGEM: Mon @ 5 pm?
* Biocircuits: Tue, 10a-12p
** Speaker 4: Ophelia
** Speaker 5: open
** iGEM presentation (30 min)
* Robotics: Tue, 1p-3p
** Speaker 3: Shuo
** Speaker 4: Sandeep
* SURF meetings, cycle 2: Thu, pm
** 3:00 pm: open
** 3:30 pm: open
** 4:00 pm: open
** 4:30 pm: open
** 5:00 pm: open
|
Mon @ 12: Speaker TBD
|
|- valign=top
|

===== 18-22 Jul =====
|
* SURF meetings, cycle 2: Thu pm
** 2:30p: open
** 3:00p: open
** 3:30p: open
** 4:00p: open
** 4:30p: open
* iGEM: Thu, 5-6p?
* Biocircuits: Fri, 10a-12p
** Speaker 6: Ye Yuan
** Speaker 7: Dionysios
** SURF 1: Paul
* Robotics: Fri, 1p-3p
** Speaker 5: open
** SURF 1: Magnus
** SURF 2: Stephanie
* NCS: Fri, 3p-5p
** Speaker 5: Mumu
** Speaker 6: Ufuk
** SURF 1: Petter
|
Fri @ 12: Josh Michener
|
* RMM out 18-21 Jul am
* Josh Michener visiting 22 Jul
|- valign=top
|

===== 25-29 Jul =====
|
|
|
* RMM out 25-29 Jul
|- valign=top
|

===== 1-5 Aug =====
|
* iGEM: 5-6p?
* Biocircuits: Fri, 10a-12p
** Speaker 8: Marcella
** SURF 2: Ishan
** SURF 3: Arjun
* NCS: Fri, 1p-3p
** Speaker 7: Scott Livingston
** Speaker 8: Eric
** SURF 2: Yuchen
* SURF meetings, cycle 3: Fri, pm
** 3:00p: open
** 3:30p: open
** 4:00p: open
** 4:30p: open
** 5:00p: open
|
Fri @ 12: speaker TBD
|
* RMM out 1-4 Aug
|- valign=top
|

===== 8-12 Aug =====
|
* Robotics: Tue, 1p-3p
** Speaker 6: open
** SURF 3: Klavdia
* SURF meetings, cycle 3: Tue, pm
** 3:00p: open
** 4:30p: open
** 4:00p: open
** 5:30p: open
** 6:00p: open
* Biocircuits: Thu, 10a-12p
** Speaker 9: Jongmin
** Speaker 10: open
** SURF 4: Keshav
* iGEM: 5p-6p
|
Thu @ 12: speaker TBD
|
|- valign=top
|

===== 15-19 Aug =====
|
|
|
RMM out 15-19 Aug
|- valign=top
|

===== 22-26 Aug =====
|
* Biocircuits: Mon, 10a-12p
** Speaker 11: open
** Speaker 12: open
** Speaker 13: open
* Robotics: Mon, 1p-3p
** Speaker 7: open
** Speaker 8: open
* NCS: Mon, 3p-5p
** Speaker 9: open
** Speaker 10: Necmiye
* iGEM: 5p-6p
|
Tue @ 12: speaker TBD
|
RMM out: 25 Aug (pm) - 1 Sep (pm)
|- valign=top
|

===== 29 Aug - 2 Sep =====
|
* Robotics: Thu, 1-3p
** Speaker 9: Shuo
** Speaker 10: Pete
* NCS: Thu, 3-5p
** Speaker 11: Asghar
** Speaker 12: Eric
* iGEM: Thu, 5p-6p
* Biocircuits; Fri, 10a-12p
** Speaker 14: open
** Speaker 15: open
** Speaker 16: open

|
Fri @ 12p (tentative): speaker TBD
|
* RMM out: 25 Aug (pm) - 1 Sep (pm)
|- valign=top
|

===== 5-9 Sep =====
|
|
|
* RMM out, 5-9 Sep
|- valign=top
|
===== 12-16 Sep =====
|
* Biocircuits: Tue, 10a-12p
** Speaker 17: open
** Speaker 18: open
** Speaker 19: open
* NCS: Wed, 1p-3p
** Speaker 13: Mumu
** Speaker 14: Ufuk
|
Tue @ 12p: speaker TBD
|
|- valign=top
|

===== 19-23 Sep =====
|
* Robotics: Mon, 1p-3p
** Speaker 11: Asghar
** Speaker 12: open
* Biocircuits: Tue, 10a-12p
** Speaker 20: open
** Speaker 21: open
** Speaker 22: open
|
Tue @ 12p: speaker TBD
|
RMM out, 20 Sep (pm) to 23 Sep
|}

June 2011 meetings

2011-05-31T15:50:38Z

Opheliav: /* 6 Jun (Mon) */

__NOTOC__
{| border=1 width=100%
|- valign=top
| width=20% |

| width=20% |

| width=20% |
==== 1 Jun (Wed) ====
* 9:15a - Ye
* 10:00a - Matanya
* 11:00a - Marcella
* 1:00p - Anu
* 3:00p - CDS tea
* 4:00p - Fei Y
* 5:00p - (Shuo; lab stuff)
* 5:30p - Dionysios
* 6:30p - Shaunak
| width=20% |
==== 2 Jun (Thu) ====
* 10:00a - Biocircuits
* 12:00p - Group meeting
* 5:30p - Necmiye
| width=20% |
==== 3 Jun (Fri) ====
* UCLA
* BE BBQ
|- valign=top
| width=20% |
==== 6 Jun (Mon) ====
* 10:00a - Vanessa
* 11:00a - Henry J
* 12:30p - Robotics
* 5:30p - Andrea
* 6:30p - Ophelia
| width=20% |

==== 7 Jun (Tue) ====
* 10:00a - NCS
* 12:00p - Group meeting
* 3:30p - Scott Livingston
* 4:30p - Open
* 5:30p - Ufuk
* 6:30p - Open
| width=20% |

==== 8 Jun (Wed) ====
* 9:30a - Eric
* 10:30a - Open
* 11:30a - Open
* 1:00p - Open
* 2:00p - Emzo
* 3:00p - CDS tea
* 5:30p - Open
* 6:30p - Open
* 7:30p - Open
| width=20% |

==== 9 Jun (Thu) ====
* 11:30a - Open
* 1:00p - Open
* 2:00p - Open
* 3:00p - CDS 90
* 4:30p - Enoch Yeung
* 5:30p - Open
* 6:30p - Open
| width=20% |

==== 10 Jun (Fri) ====
* 5:30p - Open
|}

Mini-bootcamp 2011

2011-02-28T22:48:09Z

Opheliav: /* Session 4: microscope */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
*Project #1.5
| width=20% | 4 Mar: 1:30p-Z
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: [[plate reader]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time

===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: [[microscope]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Learn basic principles and design of the Olympus IX-81 light microscope
* Learn how to make agarose pads for imaging E coli
* Basics of Micro-Manager software
* Discuss image analysis

===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

File:Filtercube.png

2011-02-28T21:33:43Z

Opheliav:

File:Microscope.png

2011-02-28T21:32:10Z

Opheliav:

File:Objective.jpg

2011-02-28T21:28:55Z

Opheliav:

Mini-bootcamp 2011

2011-02-26T23:37:05Z

Opheliav: /* Session goals: */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: [[plate reader]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time

===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: [[microscope]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Learn basic principles and design of the Olympus IX-81 light microscope
* Basics of Micro-Manager software
* Learn how to make agarose pads for imaging E coli
* Discuss image analysis

===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

Mini-bootcamp 2011

2011-02-26T23:32:47Z

Opheliav: /* Session 4: microscope */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: [[plate reader]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time

===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: [[microscope]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Learn basic principles and design of the light microscope
* Learn how to make agarose pads for imaging E coli
* Discuss image analysis
===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

Mini-bootcamp 2011

2011-02-26T23:29:45Z

Opheliav: /* Session 4: microscope */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: [[plate reader]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time

===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: microscope ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Learn basic principles and design of the light microscope
* Learn how to make agarose pads for imaging E coli
* Discuss image analysis
===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

File:Absorbance.png

2011-02-23T18:04:57Z

Opheliav:

File:Bottom.png

2011-02-22T00:37:27Z

Opheliav:

File:Screen shot 2011-02-21 at 11.30.26 AM.png

2011-02-21T19:38:26Z

Opheliav: uploaded a new version of "File:Screen shot 2011-02-21 at 11.30.26 AM.png": Reverted to version as of 19:34, 21 February 2011

File:Screen shot 2011-02-21 at 11.30.26 AM.png

2011-02-21T19:37:35Z

Opheliav: uploaded a new version of "File:Screen shot 2011-02-21 at 11.30.26 AM.png"

File:Screen shot 2011-02-21 at 11.30.26 AM.png

2011-02-21T19:34:56Z

Opheliav:

Mini-bootcamp 2011

2011-02-21T19:15:46Z

Opheliav: /* Session 3: plate reader */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: [[plate reader]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time

===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: microscope ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

Mini-bootcamp 2011

2011-02-21T19:11:43Z

Opheliav: /* Session goals: */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: plate reader ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time

===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: microscope ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

Mini-bootcamp 2011

2011-02-21T19:11:04Z

Opheliav: /* Session 3: plate reader */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: plate reader ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
:*Growth in shaker (manual time points)
:*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time
===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: microscope ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

Mini-bootcamp 2011

2011-02-21T19:09:10Z

Opheliav: /* Session 3: plate reader */

This page contains a description of the mini-bootcamp run in Feb 2011. __NOTOC__

=== Group ===
<center>
{| width=90%
|- valign=top
| width=25% |
===== Students =====
* Jorge Goncalves
* Jun Liu
* Yuan Ye
* Enoch Yeung
| width=25% |

===== Part-time students =====
* Elisa Franco
* Richard Murray
| width=25% |
===== Instructors =====
* Emzo de los Santos
* Joe Meyerowitz
* Ophelia Venturelli
* Vanessa Jonsson
* Jongmin Kim
| width=25% |

===== Project advisor =====
* Richard Murray
|}
</center>

=== Bootcamp description ===

{| width=100% border=1
|- valign=top
| rowspan=3 |
The goal of this bootcamp is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 2 reporters will be built using different DNA locations and directions, and characterized in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry and microscopy).

Bootcamp objectives:
* Project 1: Construct a simple genetic circuit that tests the effects of putting different reporters in different configurations in a plasmid. Characterize the differences (if any) in mean expression level of the circuits, possibly in multiple growth conditions, using a plate reader
* Project 2: Characterize differences in expression distributions using flow cytometry (FACS Calibur) and fluorescent microscopy
* Project 3: Perform in vitro testing of the constructs using the PURExpress kit and spectrofluorometer to check for differences in mean expression level
|
[[Image:lambda_switch.png|300px]]
* Circuit layout: directions, ordering
|-
|
[[Image:biobrick_plasmid.png|300px]]
* Copy number
* Origin of replication
* Antibiotic resistance
* [[http:partsregistry.org/Plasmid_backbones|Biobrick plasmids]]
|-
|
* (Cell strain)
* Growth media: LB, M9/glycerol, M9/glucose
* Induction level
* Temperature
|}

=== Schedule ===
{| width=100% border=1
|- valign=top
| width=20% | 14 Feb: 2-4
* Biocircuits mini-group meeting - planning
* Richard
| width=20% | 15 Feb
| width=20% | 16 Feb:
* [[#Session 0: project discussion and lab tour|Session 0: project discussion and lab tour]]
* Richard, Ophelia
* Joe, Elisa
| width=20% | 17 Feb: 2:30-6
* [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]]
* Emzo, Jongmin
| width=20% | 18 Feb
|- valign=top
| width=20% | 21 Feb: 1-6
* [[#Session 2: cloning|Session 2: cloning]]
* Joe, Emzo
| width=20% | 22 Feb
| width=20% | 23 Feb: 1-6
* [[#Session 3: plate reader|Session 3: plate reader]]
* Ophelia, Richard
| width=20% | 24 Feb
* Project #1
| width=20% | 25 Feb
* Project #1

|- valign=top
| width=20% | 28 Feb
* Project #1
| width=20% | 1 Mar
* Project #1
| width=20% | 2 Mar: TBD
* [[#Session 4: microscopy|Session 4: microscopy]]
* Ophelia, Joe
| width=20% | 3 Mar: TBD
* [[#Session 5: flow cytometry|Session 5: flow cytometry]]
* Joe, Vanessa
| width=20% | 4 Mar
* Project #2
|- valign=top
| width=20% | 7 Mar
* Project #2
| width=20% | 8 Mar: TBD
* [[#Session 6: spectrofluorometer|Session 6: spectrofluorometer]]
* Jongmin, Elisa
| width=20% | 9 Mar
* Project #3
| width=20% | 10 Mar
* Project #3
| width=20% | 11 Mar
* Project #3
|}
 
<hr>
==== Session 0: project discussion and lab tour ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Overview of project goals
* Tour of 040 Keck
* Lab safety
===== Instructors: =====
* Richard Murray, Ophelia Venturelli
* Joe Meyerowitz, Elisa Franco (lab tour, safety)
<hr>
==== [[Mini-bootcamp_2011/Session 1: lab techniques|Session 1: lab techniques]] ====
This lab session will teach some of the basic techniques that will be used throughout the bootcamp. We assume no background in molecular biology laboratory techniques. By the end of this session, students will be able to transform a plasmid into cells, pick colonies containing the plasmid, grow the cells up to a given optical density, extract the plasmids, and quantify them.
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Lab safety
* Laboratory techniques: gloves, pipetting, disposal
* Transforming plasmids into cells, growing, extracting
* Clean up: benches, glassware

===== Instructors: =====
* Emzo
* Jongmin
| width=50% |
===== Techniques and equipment: =====
* Pipetting
* Transformation, selection, growth
* Optical density (OD) measurements (nanodrop?)
* Mini-preps
* Quantification (nanodrop)
* Autoclave
|}
<hr>

==== [[Mini-bootcamp_2011/Session 2: cloning|Session 2: cloning]] ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Discussion of PCR, primer design, Gibson assembly, gels
* Demonstration of PCR
* Demonstration of Gibson assembly
* Demonstration of electrophoresis, restriction digestion, mapping
* Transform Gibson product

===== Instructors: =====
* Joe
* Emzo
| width=50% |

===== Techniques and equipment: =====
* PCR
* Restriction digests
* Gels
* Gibson assembly
|}
<hr>

==== Session 3: plate reader ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
* Set up dose response with E. coli strains using serial dilution method
* Learn strategies for measuring dynamics in plate reader
*Growth in shaker (manual time points)
*Growth in VictorX3 (automated measurements)
* Measure gene expression (GFP) and OD (cell mass) using VictorX3 over a period of time
===== Instructors: =====
* Ophelia
* Richard
| width=50% |

===== Techniques and equipment: =====
* Victor X3 plate reader
|}
<hr>

==== Session 4: microscope ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Ophelia
* Joe
| width=50% |
===== Techniques and equipment: =====
* Olympus IX-81 microscope
* MATLAB tools for image analysis
|}
<hr>

==== Session 5: flow cytometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Joe
* Vanessa
| width=50% |
===== Techniques and equipment: =====
* FACS Calibur flow cytometer
* MaxQuant (?)
|}
<hr>

==== Session 6: spectrofluorometer ====
{| width=100%
|- valign=top
| width=50% |
===== Session goals: =====
*
===== Instructors: =====
* Jongmin
* Elisa
| width=50% |

===== Techniques and equipment: =====
* PURExpress protein expression kit
* Protein gels (?)
* Fluorilog 3 spectrofluorometer
|}

Tal Danino, Jan 2011

2011-01-24T19:38:22Z

Opheliav: /* Agenda */

Tal Danino will be visiting Caltech on 26 Jan 2011 (Wed). Sign up for a time to meet with him below.

=== Agenda ===

{{agenda begin}}
{{agenda item|10:00|Richard Murray, 109 Steele}}
{{agenda item|10:45|Elisa Franco}}
{{agenda item|11:30|Frances Arnold}}
{{agenda item|12:00p|Lunchtime seminar, 214 Steele}}
{{agenda item|1:30p|Niles Pierce, Broad}}
{{agenda item|2:00p|Rob Phillips, Broad}}
{{agenda item|2:30p|Open}}
{{agenda item|3:00p|CDS tea}}
{{agenda item|3:45p|Open}}
{{agenda item|4:30p|Ophelia}}
{{agenda end}}

=== Talk ===

'''Synthetic gene oscillators and their applications'''

Wednesday, 26 January 2011<br>
12:00, 114 Steele (library)

The engineering of genetic circuits with predictive functionality in living cells represents a defining focus of the expanding field of synthetic biology. This focus was elegantly set in motion a decade ago with the design and construction of a genetic toggle switch and an oscillator, with subsequent highlights that have included circuits capable of pattern generation, noise shaping, edge detection and event counting. Here we describe an engineered gene network with global intercellular coupling that is capable of generating synchronized oscillations in a growing population of cells. Using microfluidic devices tailored for cellular populations at differing length scales, we investigate the collective synchronization properties along with spatiotemporal waves occurring at millimetre scales. We use computational modelling to describe quantitatively the period and amplitude of bulk oscillations. In addition to the work on the synchronized clock, we will discuss studies on synthetic gene oscillators using a high-throughput microfluidic platform that facilitates automated tracking in single-cells. We will describe the use of this device to chemically drive synthetic gene oscillators (analogous to the way circadian systems are driven by light) as well investigation into coupling of additional circuits to oscillators.

BE 262 project, 2010

2010-08-24T02:08:22Z

Opheliav: /* Equipment */

{{righttoc}}
This page contains a description of the BE 262 (bootcamp) project for 2010.

=== Baseline project description ===

The goal of this project is to measure variability in gene expression that is relevant for synthetically designed circuits. The issue that we are trying to understand is now much variability arises for the expression of a given circuit under degrees of freedom that are typically not controlled in synthetic designs:
* Location and orientation of circuit elements in the plasmid
* Vectors used for expressing the circuit, including copy number and antibiotic resistance
* Growth conditions (temperature, oxygen, media, growth phase)
To understand how these (and other) factors will affect circuit operation, a simple genetic circuit consisting of 1 or 2 promoters will be built and implemented in a variety of conditions. The dynamic response of the circuit will be measured, including cell-to-cell variability (via flow cytometry or microscopy).

Rough timeline:
* Monday: discuss project with boot camp participants
* Tuesday evening: first meeting of project team
** Discuss project and decide on circuit + conditions to test
* Wednesday: baseline characterization, circuit construction
** Construction and cloning of synthetic circuit
** Grow up baseline cells in multiple conditions and test in plate reader, flow cytometer
* Thursday: characterize constructed circuits, design second round experiments
** Analyze data from Wednesday and decide on what new tests to run
** Grow up constructed cells in multiple conditions and test in plate reader, flow cytometer
* Friday: final round of characterizations (plus retesting, if needed), presentation preparation
** Test newly constructed circuits and/or previous circuits in multiple conditions
** Prepare presentation

=== Reading ===

* Intrinsic and extrinsic noise paper (Elowitz)
* Standard promoter paper (Endy lab)

=== Equipment and supplies ===

==== Equipment ====
* Basic cloning equipment: PCR machine, gel rig, pipettes, etc
* Plate reader: can use Victor X3 from 040 Keck
* Flow cytometer: plan to use HHMI-refurbished MoFlo cytometer
** Talked to Dave Tirrell on 16 Aug about using this instrument. Need to arrange for training (RMM)
** Need to figure out what materials (if any) need to be ordered to support likely experiments
** Outside chance that the new BD FACS Calibur unit will arrive in time to try it out
** Could also use the Elowitz lab or Spalding teaching lab Quanta for YFP/GFP (OSV)
* (Optional) Fluorescent microscope for single cell imaging. Need moveable stage + autofocus to be able to look at several pads.

==== Supplies ====
* Vectors: ???
** Can we use current vectors that Oskar is testing? What are they?
* Cloning: restriction enzymes, ligase, buffers, PCR kits, PCR product kits (QIAquick?), mini-prep kits (QIAGEN?)
** Need to figure out which restriction enzymes we'll need, especially if they are non-standard
* LB, Amp/Kan plates

=== Project setup ===

The following tasks need to be done before bootcamp to make sure that everything is ready for the project:
* Test baseline circuits in plate reader (Oskar will do this as part of SURF)
* Test baseline circuits in flow cytometer (RMM, Emzo, Joe, Ophelia)
* Test baseline circuits in microscope (???)
* Grow up cells with baseline circuits and have available for Wednesday activities

=== Data for Linda ===

# <font color=blue>Please provide a project description/abstract no later than Sept. 1st.</font>
# <font color=blue>What equipments do you need? (pipettes, eppendorf tubes, centrifuge, etc.; please note volume/amount as well)</font>
# <font color=blue>What reagents do you need? (including media; please note volume/amount as well) </font>
# <font color=blue>Are there any special items you need (please provide brand, model, part number)? i.e. we would have to place an order for them soon, so they will arrive in time.</font>
# <font color=blue>How much lab space do you need?</font>
# <font color=blue>Project will starts on Sept. 15th, Wed., do you need space to prepare for your project before Wed.? How much space? What time?</font>
# <font color=blue>What are your microscopy needs? What days? When? How long? Also, whether you need particular microscope capabilities (heated stage, fluorescence, DIC, etc.)</font>

Mar 2010 meetings

2010-03-29T19:42:58Z

Opheliav: /* 31 Mar (Wed) */

The list below has times that I am available to meet on 31 Mar - 2 Apr.
* One-on-one meetings: Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).

<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== 31 Mar (Wed) ====
{{agenda begin}}
{{agenda begin}}
{{agenda item|9:30a|Ophelia - 45m}}
{{agenda item|10:15a| Open - 45m}}
{{agenda item|11:00a| Open - 60m}}
{{agenda item||}}
{{agenda item|1:30p| Open - 60m}}
{{agenda item|2:30p|Busy - 60m}}
{{agenda item|3:30p|Open - 60m}}
{{agenda item|4:30p|Open - 60m}}
{{agenda item|5:30p|Elisa - 60m}}
{{agenda end}}

</td><td width=30%>

==== 1 Apr (Thu) ====
{{agenda begin}}
{{agenda item|9:30a|Open - 45m}}
{{agenda item|10:15a| Open - 45m}}
{{agenda item|11:00a| Javad & Somayeh - 60m}}
{{agenda item||}}
{{agenda item|1:30p| Open - 60m}}
{{agenda item|2:30p|Open - 60m}}
{{agenda item|3:30p|Open - 60m}}
{{agenda item|4:30p|Open - 60m}}
{{agenda item|5:30p|Open - 60m}}
{{agenda end}}
</td><td width=30%>

==== 2 Apr (Fri) ====
{{agenda begin}}
{{agenda item|9:30a|Open - 45m}}
{{agenda item|10:15a| Open - 45m}}
{{agenda item|11:00a| Open - 60m}}
{{agenda item||}}
{{agenda item|1:30p| Open - 60m}}
{{agenda item|2:30p|Open - 60m}}
{{agenda item|3:30p|Emzo and Joe - 60m}}
{{agenda item|4:30p|Open - 60m}}
{{agenda item|5:30p|Open - 60m}}
{{agenda end}}
</td></tr>
</table>

Feb 2010 schedule

2010-02-18T20:42:21Z

Opheliav: /* Session M1 */

Sign up below for a time to talk at the Feb 2010 "conference". '''All talks are 20 minutes long''' (shorter is OK).
<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== Session A1 ====
{{agenda begin}}
{{agenda item|9:30a|Open}}
{{agenda item|10:00a|Open}}
{{agenda item|10:30a|Open}}
{{agenda item|11:00a|Vanessa}}
{{agenda item|11:30a|Javad & Somayeh}}
{{agenda item|12:00p|Lunch break}}
{{agenda end}}

</td><td width=30%>

==== Session M1 ====
{{agenda begin}}
{{agenda item|1:00p|Paloma/Andrea}}
{{agenda item|1:30p|Pete}}
{{agenda item|2:00p|Open}}
{{agenda item|2:30p|Open}}
{{agenda item|3:00p|Open}}
{{agenda item|3:30p|Afternoon break}}
{{agenda end}}
</td><td width=30%>

==== Session P1 ====
{{agenda begin}}
{{agenda item|4:30p|Dionysios}}
{{agenda item|5:00p|Open}}
{{agenda item|5:30p|Open}}
{{agenda item|6:00p|Open}}
{{agenda item|6:30p|Open}}
{{agenda item|7:00p|End of conference}}
{{agenda end}}

</td></tr>
</table>

Feb 2010 schedule

2010-02-18T20:40:05Z

Opheliav: /* Session M1 */

Sign up below for a time to talk at the Feb 2010 "conference". '''All talks are 20 minutes long''' (shorter is OK).
<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== Session A1 ====
{{agenda begin}}
{{agenda item|9:30a|Open}}
{{agenda item|10:00a|Open}}
{{agenda item|10:30a|Open}}
{{agenda item|11:00a|Vanessa}}
{{agenda item|11:30a|Javad & Somayeh}}
{{agenda item|12:00p|Lunch break}}
{{agenda end}}

</td><td width=30%>

==== Session M1 ====
{{agenda begin}}
{{agenda item|1:00p|Paloma/Andrea}}
{{agenda item|1:30p|Pete}}
{{agenda item|2:00p|Open}}
{{agenda item|2:30p|Open}}
{{agenda item|3:00p|Ophelia}}
{{agenda item|3:30p|Afternoon break}}
{{agenda end}}
</td><td width=30%>

==== Session P1 ====
{{agenda begin}}
{{agenda item|4:30p|Dionysios}}
{{agenda item|5:00p|Open}}
{{agenda item|5:30p|Open}}
{{agenda item|6:00p|Open}}
{{agenda item|6:30p|Open}}
{{agenda item|7:00p|End of conference}}
{{agenda end}}

</td></tr>
</table>

Jan 2010 meetings

2010-01-07T17:58:27Z

Opheliav: /* 14 Jan (Thu) */

The list below has times that I am available to meet on 12-14 Jan.
* One-on-one meetings: Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).

<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== 12 Jan (Tue) ====
{{agenda begin}}
{{agenda item|4:00p|Open - 60m}}
{{agenda item|5:00p|Dom - 30m}}
{{agenda item|5:30p|Shuo - 60m}}
{{agenda item|6:30p|Andrea - 60m}}
{{agenda end}}

</td><td width=30%>

==== 13 Jan (Wed) ====
{{agenda begin}}
{{agenda item|9:30a|Dionysios - 45m}}
{{agenda item|10:15a| Mumu - 45m}}
{{agenda item|11:00a| Vanessa - 60m}}
{{agenda item||}}
{{agenda item|1:30p|Open - 30m}}
{{agenda item|2:00p|Exam}}
{{agenda item|3:30p|Open - 60m}}
{{agenda item|4:30p|cisco - 60m}}
{{agenda item|5:30p|Ufuk - 60m}}
{{agenda end}}
</td><td width=30%>

==== 14 Jan (Thu) ====
{{agenda begin}}
{{agenda item|9:00a|Exam}}
{{agenda item|10:30a|Nok - 45m}}
{{agenda item|11:15a|Javad & Somayeh - 45m}}
{{agenda item||}}
{{agenda item|1:30p|Open - 30m}}
{{agenda item|2:00p|Pete - 60m}}
{{agenda item|3:00p|Ophelia - 60m}}
{{agenda item|4:00p|Open - 30m}}
{{agenda item|4:30p|Exam}}
{{agenda item|6:30p|Open - 60m}}
{{agenda end}}
</td></tr>
</table>

Jan 2010 meetings

2010-01-07T17:58:15Z

Opheliav: /* 12 Jan (Tue) */

The list below has times that I am available to meet on 12-14 Jan.
* One-on-one meetings: Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).

<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== 12 Jan (Tue) ====
{{agenda begin}}
{{agenda item|4:00p|Open - 60m}}
{{agenda item|5:00p|Dom - 30m}}
{{agenda item|5:30p|Shuo - 60m}}
{{agenda item|6:30p|Andrea - 60m}}
{{agenda end}}

</td><td width=30%>

==== 13 Jan (Wed) ====
{{agenda begin}}
{{agenda item|9:30a|Dionysios - 45m}}
{{agenda item|10:15a| Mumu - 45m}}
{{agenda item|11:00a| Vanessa - 60m}}
{{agenda item||}}
{{agenda item|1:30p|Open - 30m}}
{{agenda item|2:00p|Exam}}
{{agenda item|3:30p|Open - 60m}}
{{agenda item|4:30p|cisco - 60m}}
{{agenda item|5:30p|Ufuk - 60m}}
{{agenda end}}
</td><td width=30%>

==== 14 Jan (Thu) ====
{{agenda begin}}
{{agenda item|9:00a|Exam}}
{{agenda item|10:30a|Nok - 45m}}
{{agenda item|11:15a|Javad & Somayeh - 45m}}
{{agenda item||}}
{{agenda item|1:30p|Open - 30m}}
{{agenda item|2:00p|Pete - 60m}}
{{agenda item|3:00p|Open - 60m}}
{{agenda item|4:00p|Open - 30m}}
{{agenda item|4:30p|Exam}}
{{agenda item|6:30p|Open - 60m}}
{{agenda end}}
</td></tr>
</table>

Jan 2010 meetings

2010-01-07T17:51:02Z

Opheliav: /* 12 Jan (Tue) */

The list below has times that I am available to meet on 12-14 Jan.
* One-on-one meetings: Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).

<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== 12 Jan (Tue) ====
{{agenda begin}}
{{agenda item|4:00p|Ophelia - 60m}}
{{agenda item|5:00p|Dom - 30m}}
{{agenda item|5:30p|Shuo - 60m}}
{{agenda item|6:30p|Andrea - 60m}}
{{agenda end}}

</td><td width=30%>

==== 13 Jan (Wed) ====
{{agenda begin}}
{{agenda item|9:30a|Dionysios - 45m}}
{{agenda item|10:15a| Mumu - 45m}}
{{agenda item|11:00a| Vanessa - 60m}}
{{agenda item||}}
{{agenda item|1:30p|Open - 30m}}
{{agenda item|2:00p|Exam}}
{{agenda item|3:30p|Open - 60m}}
{{agenda item|4:30p|cisco - 60m}}
{{agenda item|5:30p|Ufuk - 60m}}
{{agenda end}}
</td><td width=30%>

==== 14 Jan (Thu) ====
{{agenda begin}}
{{agenda item|9:00a|Exam}}
{{agenda item|10:30a|Nok - 45m}}
{{agenda item|11:15a|Javad & Somayeh - 45m}}
{{agenda item||}}
{{agenda item|1:30p|Open - 30m}}
{{agenda item|2:00p|Pete - 60m}}
{{agenda item|3:00p|Open - 60m}}
{{agenda item|4:00p|Open - 30m}}
{{agenda item|4:30p|Exam}}
{{agenda item|6:30p|Open - 60m}}
{{agenda end}}
</td></tr>
</table>

Nov 2009 meetings

2009-11-15T20:55:57Z

Opheliav: /* 24 Nov (Tue) */

The list below has times that I am available to meet on 23-25 Nov.
* Project meetings: please feel in your name if you ''cannot'' attend a project meeting at the listed time
* One-on-one meetings: Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).

<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== 23 Nov (Mon) ====
{{agenda begin}}
{{agenda item|9:30a|Open (30 min slot)}}
{{agenda item|10:00a|Exam}}
{{agenda item|12:00p|Project meeting #1:
* Enter your name if you can't attend a project meeting at this time
* Bring your own lunch
}}
{{agenda item|1:30p|Open (30 min slot)}}
{{agenda item|2:00p|Exam}}
{{agenda item|4:00p|Open}}
{{agenda item|5:00p|Open}}
{{agenda end}}

</td><td width=30%>

==== 24 Nov (Tue) ====
{{agenda begin}}
{{agenda item|9:30a|Ophelia}}
{{agenda item|10:30a|Open}}
{{agenda item|11:30a|Open (30 min slot)}}
{{agenda item||}}
{{agenda item|1:30p|Project meeting #2
* Enter your name if you can't attend a project meeting at this time
}}
{{agenda item|3:00p|Open}}
{{agenda item|4:00p|Open}}
{{agenda item|5:00p|Ufuk}}
{{agenda end}}
</td><td width=30%>

==== 25 Nov (Wed) ====
{{agenda begin}}
{{agenda item|9:30a|Open}}
{{agenda item|10:30a|Project meeting #3
* Enter your name if you can't attend a project meeting at this time
}}
{{agenda item||}}
{{agenda item|1:30p|Open}}
{{agenda item|2:30p|Open}}
{{agenda item|3:30p|Open}}
{{agenda item|4:30p|Open}}
{{agenda end}}
</td></tr>
</table>

Oct 2009 meetings

2009-10-11T22:06:29Z

Opheliav: /* 20 Oct (Tue) morning */

The list below has times that I am available to meet on 19-20 Oct. Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch).

'''This page is now locked. Please contact Richard directly if you need to set up a time to meet (or shift the time you signed up for). __NOTOC__

<br>
<table width=100% border=1>
<tr valign=top><td width=30%>
==== 19 Oct (Mon) afternoon ====
{{agenda begin}}
{{agenda item|1:00p|Pete}}
{{agenda item|1:45p|Open}}
{{agenda item|2:30p|Open}}
{{agenda item|3:15p|Javad and Somayeh}}
{{agenda end}}

</td><td width=30%>

==== 20 Oct (Tue) morning ====
{{agenda begin}}
{{agenda item|9:00a|Anissa}}
{{agenda item|9:45a|Ophelia}}
{{agenda item|10:30a|Open}}
{{agenda item|11:15a|Open}}
{{agenda end}}
</td><td width=30%>

==== 20 Oct (Tue) afternoon ====
{{agenda begin}}
{{agenda item|1:30p|Open}}
{{agenda item|2:15p|Open}}
{{agenda item|3:00p|ME reception}}
{{agenda item|3:30p|Open}}
{{agenda item|4:15p|Open}}
{{agenda item|5:00p|Open}}
{{agenda item|5:45p|Ufuk}}
{{agenda end}}
</td></tr>
</table>

Spring 2009 Meeting Schedule

2009-03-19T18:17:44Z

Opheliav: /* Fri */

__NOTOC__
Please sign up for a time to meet. Note that some meetings are for different lengths of time and different frequencies.
{| width=100% border=1
|- valign=top
| width=20% |
==== Mon ====
{{agenda begin}}
{{agenda item|1:30p|Open (short)}}
{{agenda item|2:00p|Dionysios}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Ufuk}}
{{agenda end}}
|

==== Tue ====
{{agenda begin}}
{{agenda item|1:30p|Open (short)}}
{{agenda item|2:00p|Vanessa}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|5:00p|Nok}}
{{agenda item|6:00p|Open}}
{{agenda end}}
|

==== Wed ====
{{agenda begin}}
{{agenda item|1:30p|Dom}}
{{agenda item|2:00p|Julia}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|5:00p|Elisa}}
{{agenda item|6:00p|Open}}
{{agenda end}}
|

==== Thu ====
{{agenda begin}}
{{agenda item|1:30p|Open (short)}}
{{agenda item|2:00p|Yizhar}}
{{agenda item||}}
{{agenda item|4:30p|Odd: Open}}
{{agenda item||Even: Open}}
{{agenda item|6:00p|Aldo}}
{{agenda end}}
|

==== Fri ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Ophelia}}
{{agenda item|3:00p|Andrea}}
{{agenda item|4:00p|Open}}
{{agenda item|5:00p|Open}}
{{agenda item||}}
{{agenda end}}
|}

Mar 2009 meetings

2009-02-25T17:19:39Z

Opheliav: /* Tue, 10 Mar */

The list below has times that I am available to meet between 2 Mar and 13 Mar. Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch). __NOTOC__

<br>
<table width=100% border=1>
<tr valign=top><td width=20%>
==== Mon, 2 Mar ====
{{agenda begin}}
{{agenda item|2:00p|Open}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Ben}}
{{agenda item|6:30p|Dionysios}}
{{agenda end}}

</td><td width=20%>

==== Tue, 3 Mar ====
{{agenda begin}}
{{agenda item|1:30p|Open (45 min)}}
{{agenda item|2:15p|Stephan (45 min)}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Open}}
{{agenda item|7:00p|Francisco (45 min)}}
{{agenda end}}
</td><td width=20%>

==== Fri, 6 Mar ====
{{agenda begin}}
{{agenda item|2:00p|Dom}}
{{agenda item|5:00p|Aldo}}
{{agenda item|6:00p|Open (45 min)}}
{{agenda end}}
</td></tr>
</table>

<br>
<table width=100% border=1>
<tr valign=top><td width=20%>

==== Mon, 9 Mar ====
{{agenda begin}}
{{agenda item|4:00p|Open}}
{{agenda item|6:00p|Ben}}
{{agenda item|6:30p|Open}}
{{agenda end}}
</td><td width=20%>

==== Tue, 10 Mar ====
{{agenda begin}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Ophelia}}
{{agenda item|7:00p|Open (45 min)}}
{{agenda end}}
</td><td width=20%>

==== Wed, 11 Mar ====
{{agenda begin}}
{{agenda item|4:00p|Julia}}
{{agenda item|5:00p|Ufuk}}
{{agenda end}}
</td></tr>
</table>

Gabor Orosz, Feb 2009

2009-02-04T17:34:51Z

Opheliav: /* Schedule */

Gabor Orosz, currently at postdoc at UCSB, will be visiting Caltech on 6 Feb (Fri).

=== Schedule ===

{{agenda begin}}
{{agenda item|~11:45a|Arrival; meet Ophelia in CDS library}}
{{agenda item|12:00p|Murray group meeting talk}}
{{agenda item|1:00p|Richard (109 Steele)}}
{{agenda item|1:30p|Ophelia}}
{{agenda item|2:15p|Dionysios}}
{{agenda item|3:00p|Elisa}}
{{agenda item|3:30p|Open (MPP supergroup meeting; leave open if possible)}}
{{agenda item|4:15p|Open (MPP supergroup meeting; leave open if possible)}}
{{agenda item|5:00p|Depart}}
{{agenda end}}

Paul Houpt, Feb 2009

2009-02-04T02:46:59Z

Opheliav: /* 5 Feb (Thu) */

This page contains a schedule for Paul Houpt, who will be visiting Caltech on 4-5 Feb

=== 4 Feb (Wed) ===

{{agenda begin}}
{{agenda item|10:00a|Ufuk Topcu, 114 Steele (CDS library)}}
{{agenda item|10:45a|Seminar prep}}
{{agenda item|11:00a|Seminar (TBD)}}
{{agenda item|12:00p|Lunch: Ufuk, ...}}
{{agenda item|1:30p|Andreas Krause}}
{{agenda item|2:15p|Mani Chandy}}
{{agenda item|3:00p|Nok}}
{{agenda item|3:45p|Julia Braman}}
{{agenda item|4:30p|John Doyle}}
{{agenda end}}

=== 5 Feb (Thu) ===
{{agenda begin}}
{{agenda item|9:00a|Open}}
{{agenda item|9:45a|Open}}
{{agenda item|10:30a|Ophelia}}
{{agenda item|11:15a|Open}}
{{agenda item|12:00p|Depart}}
{{agenda end}}

Feb 2009 meetings

2009-01-26T22:49:52Z

Opheliav: /* Mon, 9 Feb */

The list below has times that I am available to meet between 2 Feb and 13 Feb. Please pick a time that works and fill in your name. If none of the times work, send me e-mail (or find someone else who has a slot that does work and see if you can switch). __NOTOC__

<br>
<table width=100% border=1>
<tr valign=top><td width=20%>
==== Mon, 2 Feb ====
{{agenda begin}}
{{agenda item|2:00p|Dionysios}}
{{agenda item|5:00p|Ufuk}}
{{agenda item|6:00p|Ben}}
{{agenda item|6:30p|Nok}}
{{agenda end}}

</td><td width=20%>

==== Fri, 6 Feb ====
{{agenda begin}}
{{agenda item|9:00a|Sawyer}}
{{agenda item|12:00p|Group meeting}}
{{agenda item|2:00p|Stephan}}
{{agenda end}}
</td><td width=20%>

==== Mon, 9 Feb ====
{{agenda begin}}
{{agenda item|8:30a|Ophelia}}
{{agenda item|11:30a|Aldo}}
{{agenda item|1:00p|Yizhar}}
{{agenda item|2:00p|Julia}}
{{agenda item|6:00p|Dom}}
{{agenda item|6:30p|Håkan}}
{{agenda end}}
</td><td width=20%>

==== Fri, 13 Feb ====
{{agenda begin}}
{{agenda item|2:00p|Shuo}}
{{agenda item|3:00p|Andrea}}
{{agenda item|4:00p|Francisco}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Open}}
{{agenda end}}
</td></tr>
</table>

Winter 2009 Meeting Schedule

2008-12-24T05:41:52Z

Opheliav: /* Tue */

__NOTOC__
Please sign up for a time to meet. Note that some meetings are for different lengths of time and different frequencies.
{| width=100% border=1
|- valign=top
| width=20% |
==== Mon ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Dionysios}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Open}}
{{agenda end}}
|

==== Tue ====
{{agenda begin}}
{{agenda item|1:30p|Dom}}
{{agenda item|2:00p|Ophelia}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|5:00p|Open}}
{{agenda item|6:00p|Open}}
{{agenda end}}
|

==== Wed ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Julia}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|5:00p|Elisa}}
{{agenda item|6:00p|Ufuk}}
{{agenda end}}
|

==== Thu ====
{{agenda begin}}
{{agenda item|1:30p|Mumu}}
{{agenda item|2:00p|Yizhar}}
{{agenda item||}}
{{agenda item|4:30p|Odd: Francisco}}
{{agenda item||Even: Open}}
{{agenda item|6:00p|Open}}
{{agenda end}}
|

==== Fri ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Shuo}}
{{agenda item|3:00p|Andrea}}
{{agenda item|4:00p|Nok}}
{{agenda item|5:00p|Open}}
{{agenda item||}}
{{agenda end}}
|}

Group Schedule, Fall 2008

2008-10-13T16:29:29Z

Opheliav: /* Group Meetings */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=100%
|- valign=top
| width=50% |
* [[Fall 2008 Meeting Schedule]]
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar]
| width=50% |
* [[Group Schedule, Summer 2008]]
|}

== Group Meetings ==
Group meetings are at noon in 114 Steele. Visitors are welcome (but be prepared to get signed up to give a talk!).
{| width=100% border=1
|- valign=top
| width=30% |
{{agenda begin}}
{{agenda item|Date|Speaker}}
{{agenda item|1 Oct (Wed)|Nok}}
{{agenda item|6-10 Oct|No meeting}}
{{agenda item|15 Oct (Wed)|Shuo}}
{{agenda item|20 Oct (Mon)|Open}}
{{agenda end}}
| width=30% |
{{agenda begin}}
{{agenda item|Date|Speaker}}
{{agenda item|29 Oct (Wed)|Julia}}
{{agenda item|5 Nov (Wed)|Open}}
{{agenda item|10 Nov (Mon)|Pete}}
{{agenda item|16 Nov (Mon)|Ophelia}}
{{agenda end}}
| width=30% |
{{agenda begin}}
{{agenda item|Date|Speaker}}
{{agenda item|24 Nov (Mon)|Dionysios}}
{{agenda item|3 Dec (Wed)|Hold: visiting students}}
{{agenda item|9 Dec (Tue)|Hold for schedule changes}}
{{agenda end}}
|}

Group Schedule, Fall 2008

2008-09-25T18:14:14Z

Opheliav: /* Group Meetings */

This page contains information about various upcoming events that are of interest to the group. __NOTOC__
{| width=100%
|- valign=top
| width=50% |
* [[Fall 2008 Meeting Schedule]]
* [http://www.cds.caltech.edu/~murray/calendar.html Richard's calendar]
| width=50% |
* [[Group Schedule, Summer 2008]]
|}

== Group Meetings ==
Group meetings are at noon in 114 Steele. Visitors are welcome (but be prepared to get signed up to give a talk!).
{| width=100% border=1
|- valign=top
| width=30% |
{{agenda begin}}
{{agenda item|Date|Speaker}}
{{agenda item|1 Oct (Wed)|Nok}}
{{agenda item|6-10 Oct|No meeting}}
{{agenda item|14 Oct (Tue)|Shuo}}
{{agenda item|20 Oct (Mon)|Open}}
{{agenda end}}
| width=30% |
{{agenda begin}}
{{agenda item|Date|Speaker}}
{{agenda item|28 Oct (Tue)|Julia}}
{{agenda item|4 Nov (Tue)|Ophelia}}
{{agenda item|11 Nov (Tue)|Pete}}
{{agenda item|17 Nov (Mon)|Dionysios}}
{{agenda end}}
| width=30% |
{{agenda begin}}
{{agenda item|Date|Speaker}}
{{agenda item|25 Nov (Tue)|Open}}
{{agenda item|3 Dec (Wed)|Hold: visiting students}}
{{agenda item|9 Dec (Tue)|Hold for schedule changes}}
{{agenda end}}
|}

Fall 2008 Meeting Schedule

2008-09-24T17:10:20Z

Opheliav:

__NOTOC__
Sign up for a time to meet. Note that different slots are for different amounts of time. Here are some guides:
* 30 minute slot - weekly meeting; good if you are busy with mainly classes
* 60 minute slot - standard weekly meeting
* 90 minute slot - ''biweekly'' meeting. Pick even or odd weeks (week of 29 Sep = odd)
{| width=100% border=1
|- valign=top
| width=20% |
==== Mon ====
{{agenda begin}}
{{agenda item||}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|4:30p|Yizhar}}
{{agenda item|5:30p|Open}}
{{agenda item|6:30p|Andrea}}
{{agenda end}}
| width=20% |

==== Tue ====
{{agenda begin}}
{{agenda item|1:30p|Julia}}
{{agenda item|2:30p|Mumu}}
{{agenda item|3:00p|Odd: Open}}
{{agenda item||Even: Open}}
{{agenda item|6:00p|Odd: Francisco}}
{{agenda item||Even: Open}}
{{agenda end}}
| width=20% |

==== Wed ====
{{agenda begin}}
{{agenda item||}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|4:30p|Shuo}}
{{agenda item|5:30p|Ufuk}}
{{agenda item|6:30p|Elisa}}
{{agenda end}}
| width=20% |

==== Thu ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|3:30p|Open (short)}}
{{agenda item|4:00p|Odd: Sawyer}}
{{agenda item||Even: Open}}
{{agenda item|5:30p|Dionysios}}
{{agenda item|6:30p|Ophelia}}
{{agenda end}}
| width=20% |

==== Fri ====
{{agenda begin}}
{{agenda item||}}
{{agenda item||}}
{{agenda item|3:00p|Open}}
{{agenda item|4:00p|Open}}
{{agenda item|5:00p|Open}}
{{agenda item||}}
{{agenda end}}
|}

Summer 2008 Meeting Schedule

2008-06-08T03:02:12Z

Opheliav: /* Thu */

__NOTOC__
Pick a time that works..
{| width=100% border=1
|- valign=top
| width=20% |
==== Mon ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Julia}}
{{agenda item|3:00p|Shuo}}
{{agenda item|4:00p|Ling}}
{{agenda item|5:00p|Open}}
{{agenda end}}
| width=20% |

==== Tue ====
{{agenda begin}}
{{agenda item|12:00p|Group meeting}}
{{agenda item|2:00p|Open}}
{{agenda item|3:00p|Open}}
{{agenda item|4:00p|Synbio SURF}}
{{agenda item|5:00p|Open}}
{{agenda end}}
| width=20% |

==== Wed ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Open}}
{{agenda item|3:30p|Alice SURF}}
{{agenda item|4:30p|Open}}
{{agenda item|5:30p|Open}}
{{agenda end}}
| width=20% |

==== Thu ====
{{agenda begin}}
{{agenda item||}}
{{agenda item|2:00p|Open}}
{{agenda item|3:00p|Ophelia}}
{{agenda item|4:00p|Open}}
{{agenda item|5:00p|Nok}}
{{agenda item|6:00p|iGEM SURF?}}
{{agenda end}}
|}

Domitilla Del Vecchio, June 2008

2008-06-02T22:30:42Z

Opheliav: /* Monday, 9 June */

Domitilla Del Vecchio will be visiting Caltech on 9 June (Mon). She has a few empty slots in her schedule:

=== Monday, 9 June ===
* 7a-10a: Richard
* 10a-11a: Pietro Perona's group
* 11a-12p: Seminar
* 12p-2p: Richard
* 2p-2:45p: Open
* 2:45p-3:30p: Open
* 3:30p-4:15p: Ophelia
* 4:15p-5:00p: Richard (tentative; replace if other slots are full)
* 5:00p-7:00p: Richard