Murray Wiki - User contributions [en]

Chelsea Hu, Apr 2018

2018-04-09T19:53:17Z

Nolsman: /* Tuesday */

Chelsea Hu, a PhD student working with Julius Lucks at Northwestern, is going to be visiting on 9-10 Apr. Sign up below for a time to meet with her.

=== Monday ===
* ~9:15 am: Richard, 109 Steele
* 10 am: Biocircuits group meeting
* 12 pm: Lunch with biocircuits postdocs (Leo Green, Michaelle Mayalu)
* 1:30 pm: Andy Halleran
* 2:15 pm: Joe Meyerowitz
* 3:00 pm: Sam Clamons
* 4:00 pm: BELS seminar, 119 Kerckhoff
* 5:00 pm: done for the day

=== Tuesday ===
* 9:30 am: Pradeep Ramesh (postdoc in Mikhail Shapiro's group), Red Door
* 10:15 am: Biological Control project discussion (Leo, Reed McCardell, Cindy Ren, Anandh Swaminathan, Mark Prator)
* 12:00 pm: Lunch with NCS postdocs (Sofie Haesaert, Jin Ge, Ioannis Filippidis)
* 1:00 pm: Andrey Shur
* 1:45 pm: Vipul Singhal
* 2:30 pm: Mark Budde and Yitong Ma (Elowitz group), 168 Broad
* 3:15 pm: Xiaojing Gao and Lucy Chong (Elowitz group), 168 Broad
* 4:00 pm: Noah Olsman, Broad 2nd floor lounge
* 5:00 pm: Niles Pierce, 165 Broad
* 5:30 pm: Richard, 109 Steele

Chelsea Hu, Apr 2018

2018-04-07T19:06:09Z

Nolsman: /* Tuesday */

Chelsea Hu, a PhD student working with Julius Lucks at Northwestern, is going to be visiting on 9-10 Apr. Sign up below for a time to meet with her.

=== Monday ===
* ~9:15 am: Richard, 107 Steele
* 10 am: Biocircuits group meeting
* 12 pm: Lunch with biocircuits postdocs (Leo Green, Michaelle Mayalu)
* 1:30 pm: Andy Halleran
* 2:15 pm: Joe Meyerowitz
* 3:00 pm: Sam Clamons
* 4:00 pm: BELS seminar, 119 Kerckhoff
* 5:00 pm: done for the day

=== Tuesday ===
* 9:30 am: Pradeep Ramesh (postdoc in Mikhail Shapiro's group), Red Door
* 10:15 am: Biological Control project discussion (Leo, Reed McCardell, Cindy Ren, Anandh Swaminathan, Mark Prator)
* 12:00 pm: Lunch with NCS postdocs (Sofie Haesaert, Jin Ge, Ioannis Filippidis)
* 1:00 pm: Open (use if no other slots available)
* 1:45 pm: Vipul Singhal
* 2:30 pm: Open
* 3:15 pm: Xiaojing Gao and Lucy Chong (Elowitz group)
* 4:00 pm: Noah Olsman Annenberg 2nd floor lounge
* 5:00 pm: Niles Pierce, 165 Broad
* 5:30 pm: Richard, 107 Steele

Michaëlle Mayalu, Jan 2017

2017-01-20T22:38:52Z

Nolsman: /* Schedule */

Michaëlle Mayalu from MIT will visit on 23-24 January. __NOTOC__

=== Schedule ===
{| border=1
|- valign=top
| width=50% |
==== 23 Jan (Mon) ====
* 8 am: Breakfast with Richard (Ath)
* 9 am: Anandh (103 Steele?)
* 10 am: DARPA Biological Control program meeting, 168 Broad (walk over with Richard)
<hr>
* 12 pm: Seminar, 121 Annenberg (abtract below)
* 1 pm: lunch with TBD
<hr>
* 2 pm: Open
* 2:45 pm: Noah Olsman (2nd floor lounge, Annenberg)
* 3:30 pm: Open
* 4:15 pm: Aaron Ames, 266 Gates-Thomas
<hr>
* 5:30 pm: Meet Richard in 107 Steele. Walk to dinner.

| width=50% |

==== 24 Jan (Tue) ====
* 9:00 am: Open
* 9:45 am: Open
* 10:30 am: Cindy (2nd floor lounge, Annenberg)
* 11:15 am: Ania (2nd floor lounge, Annenberg)
<hr>
* 12 pm: Henrike Niederholtmeyer seminar, 121 Annenberg
<hr>
* 1:00 pm: Open
* 1:45 pm: [[Jan 2017 meeting schedule|Richard]]
* 2:30 pm: John Doyle
* 3:15 pm: Vipul (Keck 222)
* 4:00 pm: Open
* 4:45 pm: Open
* 5:30 pm: Done for the day
|}

=== Seminar info ===
<center>
'''Reduced-order Systems Approach to Prediction of Emergent Behaviors'''

Michaëlle N. Mayalu<br>
Massachusetts Institute of Technology

Monday, January 23, 2017<br>
12-1 pm, 121 Annenberg
</center>

Increased understanding of the physical and chemical principles that drive a biological process has led to the development of mathematical formulations that are used to simulate a rich variety of responses. As a result, a vast amount of simulation data can be created for analyzing single cell behavior numerically. However complex and extensive mechanisms involved in emergent behavior of multiple interacting cells may become intractable due to mathematical and computational complexity. This talk will address how we can exploit simulation data describing the nonlinear dynamics of single cell behavior to create a reduced- order linear state equation in latent variable space. Furthermore, the linearity of the reduced-order latent variable state equation allows for the superposition of multiple solutions to predict emergent behaviors of interacting cells.
The linear latent state equation describing the nonlinear dynamics of single cell is created in two steps. First the original independent state variables are augmented by adding auxiliary variables necessary to “sufficiently inform” the single cell nonlinear dynamics. This creates a high-dimensional state space where a linear description of the nonlinear system can be found. Second, latent variables extracted from the high-dimensional state space and used to create the reduced-order linear equation. While the resultant latent state equation is linear, complex nonlinearities are embedded in the compact model, leading to precise and global linearization of nonlinear dynamics. Furthermore, in order to predict multi-cell emergent behavior, the reduced-order linear models of single cells are used as agents in a comprehensive agent-based framework based on linear superposition of mutually shared variables. The approach is motivated by emergent behaviors in collective cell migration in order to gain insight for the study and control cancer metastasis and wound healing. However, the general approach may be applied to systems of interacting nonlinear agents, which would otherwise be prohibitively complex to compute.

Michaëlle N. Mayalu is a Ph.D. student at the Brit and Alex d’Arbeloff Laboratory for Information Systems and Technology in the Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge MA. She received the B.S., and M.S., degrees in Mechanical Engineering in 2010 and 2012 from Massachusetts Institute of Technology. Her thesis work is focused on modeling and predicting biological systems behavior by drawing on aspects of dynamic modeling and simulation, data analysis, statistical learning and control theory. Her thesis supervisor is Professor H. Harry Asada in the Department of Mechanical Engineering at MIT.

Template:Cs/ee/me 75-fa15

2015-09-28T20:29:51Z

Nolsman:

{| width=100% border=1
|-
| align=center width=20% | [[CS/EE/ME 75, 2015-16|CS/EE/ME 75]]
| align=center width=20% | [[CS/EE/ME 75, 2015-16 - Project Organization|Organization]]
| align=center width=20% | [[CS/EE/ME 75, 2015-16 - Course Schedule|Schedule]]
| align=center width=20% | [http://fsae.caltech.edu:8090/confluence/dashboard.action Team wiki]
| align=center width=20% |  Public site
|}

BE 150/Bi 250 Spring 2014, Project presentation schedule

2014-05-20T16:28:53Z

Nolsman: /* Monday, 1 June 2014 */

Attached below is the schedule for project presentation for BE 150/Bi 250, Spring 2014. Each team should sign up for one 30 minute slot. Please list a tentative title for your talk and the names or initials of the group members who will present. You should prepare a 20 minute talk and then we'll have ~10 minutes of Q&A.

'''Please leave at least one slot in the middle or at the end of each session unfilled, so that we have some buffer time (just in case).'''

=== Thursday, 29 May 2014 ===
* 2:00 pm: Open
* 2:30 pm: Open
* 3:00 pm: Open
* 3:30 pm: Open (use only if no other slots are available)
* 4:00 pm: Open
* 4:30 pm: Open

=== Friday, 30 May 2014 ===
* 10:00 am: Open
* 10:30 am: Open
* 11:00 am: Open
* 11:30 am: Open (use only if no other slots are available)

=== Monday, 1 June 2014 ===
* 2:00 pm: Open
* 2:30 pm: Open
* 3:00 pm: Open
* 3:30 pm: Open (use only if no other slots are available)
* 4:00 pm: Predator-Prey Model, Julia, Christopher, Belen
* 4:30 pm: Coupled Oscillators with Delays - Harry & Noah

Advising meetings, Dec 2013

2013-11-25T07:42:27Z

Nolsman:

Please sign up for one of the following slots to discuss your courses for Winter 2014. You can log in and edit the page using your IMSS credentials. Note that this is a public page, so you may wish to use only your first name or your initials.

Monday, 25 November 2013
* 3:00 pm: Noah
* 3:15 pm: Open
* 5:00 pm: David
* 5:15 pm: Open
* 5:30 pm: Soumya
* 5:45 pm: Julia
* 6:00 pm: Open
* 6:15 pm: Andrew

Tuesday, 26 November 2013
* 7:00 pm: Lillian
* 7:15 pm: Open